Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ABEF89_RS01725 Genome accession   NZ_CP156801
Coordinates   363619..364338 (+) Length   239 a.a.
NCBI ID   WP_034585538.1    Uniprot ID   A0A0A3W6E4
Organism   Acinetobacter thermotolerans strain ANC 7892     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 358619..369338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF89_RS01710 (ABEF89_01710) ponA 359222..361753 (-) 2532 WP_347456162.1 penicillin-binding protein PBP1a -
  ABEF89_RS01715 (ABEF89_01715) pilM 361920..362978 (+) 1059 WP_034585542.1 pilus assembly protein PilM Machinery gene
  ABEF89_RS01720 (ABEF89_01720) comN 362978..363622 (+) 645 WP_034585540.1 PilN domain-containing protein Machinery gene
  ABEF89_RS01725 (ABEF89_01725) comO 363619..364338 (+) 720 WP_034585538.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABEF89_RS01730 (ABEF89_01730) pilP 364338..364865 (+) 528 WP_034585535.1 pilus assembly protein PilP Machinery gene
  ABEF89_RS01735 (ABEF89_01735) pilQ 364882..367053 (+) 2172 WP_347456163.1 type IV pilus secretin PilQ Machinery gene
  ABEF89_RS01740 (ABEF89_01740) aroK 367090..367626 (+) 537 WP_034585528.1 shikimate kinase AroK -
  ABEF89_RS01745 (ABEF89_01745) aroB 367655..368734 (+) 1080 WP_347456164.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27068.59 Da        Isoelectric Point: 4.6463

>NTDB_id=1002920 ABEF89_RS01725 WP_034585538.1 363619..364338(+) (comO) [Acinetobacter thermotolerans strain ANC 7892]
MSEQFEDLGQEPVVAPKNKMTVEKFFQQFNTLDPNNYGSWPIAVKITCWIFIVFVVMMLAYFGLIRGQIEAIAQANAQEQ
NLLNEFRDKDSKLRNLQQYQQQLQEMEARFNQQLEQLPKETEIPGLVEDINLSGVNAGLKFKNIRLEPEVKQEFFIEQPI
SIEATGDYHSFGSFVSGIAGLSRIVTLHDFEITGTANKEKKTDIPVIDYVVKAKTYRYVGNTNTNSTADNTAANSQGAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=1002920 ABEF89_RS01725 WP_034585538.1 363619..364338(+) (comO) [Acinetobacter thermotolerans strain ANC 7892]
ATGAGCGAACAATTTGAAGATTTAGGTCAAGAGCCAGTTGTTGCACCGAAAAATAAAATGACGGTGGAGAAGTTTTTCCA
GCAGTTTAATACCCTGGATCCAAATAATTATGGTAGCTGGCCGATCGCGGTTAAAATTACCTGCTGGATTTTTATTGTCT
TTGTGGTAATGATGCTGGCTTATTTTGGTTTGATCCGCGGTCAAATCGAAGCCATTGCACAAGCGAATGCTCAGGAGCAA
AACTTGCTCAATGAGTTCCGTGATAAGGACTCTAAATTGCGTAACTTACAGCAATATCAGCAACAATTGCAGGAAATGGA
AGCACGTTTTAACCAGCAACTCGAGCAGTTGCCGAAAGAAACAGAGATTCCTGGGCTGGTTGAAGACATCAACCTAAGTG
GTGTCAATGCAGGTTTGAAGTTCAAGAATATCCGCCTTGAACCTGAAGTGAAGCAGGAATTCTTTATTGAGCAACCGATT
TCGATTGAAGCAACGGGTGATTATCACTCCTTTGGTTCATTTGTCAGCGGTATTGCAGGTCTGTCACGTATCGTGACATT
GCATGACTTTGAAATTACCGGTACAGCAAATAAAGAGAAGAAAACTGATATTCCAGTGATTGATTATGTCGTGAAGGCAA
AAACTTATCGCTATGTAGGAAACACAAATACTAATAGTACAGCAGATAATACAGCTGCAAACAGTCAGGGGGCACAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(72-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3W6E4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

67.373

98.745

0.665
  pilO Acinetobacter baumannii D1279779

67.382

97.49

0.657

Multiple sequence alignment