Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABEF89_RS01510 Genome accession   NZ_CP156801
Coordinates   319329..320561 (-) Length   410 a.a.
NCBI ID   WP_347456140.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7892     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 314329..325561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF89_RS01485 (ABEF89_01485) - 315653..315976 (+) 324 WP_034587531.1 pyrimidine/purine nucleoside phosphorylase -
  ABEF89_RS01490 (ABEF89_01490) rlmB 316130..316879 (+) 750 WP_347456136.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABEF89_RS01495 (ABEF89_01495) - 316913..317803 (+) 891 WP_347456137.1 DMT family transporter -
  ABEF89_RS01500 (ABEF89_01500) coaE 317853..318452 (-) 600 WP_347456138.1 dephospho-CoA kinase -
  ABEF89_RS01505 (ABEF89_01505) pilD 318454..319314 (-) 861 WP_347456139.1 A24 family peptidase Machinery gene
  ABEF89_RS01510 (ABEF89_01510) pilC 319329..320561 (-) 1233 WP_347456140.1 type II secretion system F family protein Machinery gene
  ABEF89_RS01515 (ABEF89_01515) pilB 320593..322302 (-) 1710 WP_347456141.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABEF89_RS01520 (ABEF89_01520) tpiA 322585..323376 (+) 792 WP_347456142.1 triose-phosphate isomerase -
  ABEF89_RS01525 (ABEF89_01525) secG 323390..323719 (+) 330 WP_034587516.1 preprotein translocase subunit SecG -
  ABEF89_RS01555 (ABEF89_01555) rimP 324670..325194 (+) 525 WP_034587514.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45171.88 Da        Isoelectric Point: 9.9331

>NTDB_id=1002916 ABEF89_RS01510 WP_347456140.1 319329..320561(-) (pilC) [Acinetobacter thermotolerans strain ANC 7892]
MASVKKGQMMPTFLYEGVDRKGVKIKGEMPARNLALAKVTLRKQGISIKSIREKKKNILEGLMKKKVSTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDKLFCSLVESGEQSGALETMLDRVALY
KEKSELLKQKIKKAMKYPISVIIVAIIVTIILMVKVVPVFEELFAGFGADLPAFTKMVVAMSKWMQAYWFLLIIFIGIVI
TTFLEAKKRSKKFRDFLDKTALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDV
ATGQQLQFAMRVTNKFPSMAVQMVAIGEESGALDAMLEKVATHYENEVDNAVDGLTSMMEPLIMSVLGILVGGLVIAMYL
PIFQMGSIVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1002916 ABEF89_RS01510 WP_347456140.1 319329..320561(-) (pilC) [Acinetobacter thermotolerans strain ANC 7892]
ATGGCTTCAGTGAAAAAAGGTCAGATGATGCCAACCTTCCTTTATGAAGGGGTAGACCGCAAAGGGGTTAAAATTAAAGG
TGAAATGCCAGCACGCAACCTGGCTTTGGCCAAGGTGACACTGCGTAAGCAAGGCATCAGCATCAAGAGTATTCGGGAGA
AAAAGAAGAATATTCTTGAAGGCCTAATGAAAAAGAAAGTATCTACCCTAGATATCACTATTTTCACCCGACAACTAGCA
ACCATGATGAAAGCAGGTGTACCTTTGGTACAGGGTTTTGAAATCGTCGCCGAGGGTCTAGAAAACCCTGCTATGCGCGA
AGTAGTACTTGGCATTAAAGGTGAAGTTGAAGGGGGTAATACCTTTGCTGGCGCACTGCGTAAATACCCACAATATTTCG
ACAAACTGTTCTGTTCACTGGTGGAATCCGGTGAACAATCTGGTGCGCTGGAAACCATGCTAGATCGGGTAGCCCTATAT
AAAGAAAAAAGTGAGCTATTAAAACAGAAAATTAAAAAAGCGATGAAATACCCAATATCGGTAATCATTGTTGCAATTAT
TGTAACTATCATTCTGATGGTCAAAGTTGTTCCAGTTTTTGAAGAGCTGTTTGCTGGTTTCGGTGCTGACCTACCCGCTT
TTACTAAGATGGTAGTAGCCATGTCTAAATGGATGCAAGCTTATTGGTTCCTTTTGATTATTTTTATCGGAATTGTGATT
ACAACTTTTCTAGAAGCCAAAAAACGCAGCAAAAAATTCCGTGATTTTCTAGATAAAACAGCTCTTAAAGCCCCCATTTT
TGGCGATCTAGTTTATAAAGCAATTATTGCCCGTTATAGTCGCACCTTAGCAACGACTTTTGCTGCCGGTGTACCGCTCA
TTGATGCTTTAGAATCTACTGCTGGTGCGACCAATAACGTAGTCTATGAAGAAGCAGTGATGAAAATCAGAGAAGACGTT
GCCACTGGTCAGCAACTGCAATTTGCGATGCGTGTCACCAATAAATTCCCATCGATGGCAGTACAGATGGTTGCCATTGG
CGAAGAATCTGGTGCACTGGATGCCATGTTGGAGAAAGTGGCTACCCATTATGAAAATGAAGTCGATAATGCTGTCGATG
GTTTAACATCAATGATGGAACCATTAATCATGTCTGTTTTAGGTATTTTAGTTGGTGGCTTAGTCATTGCGATGTATCTT
CCTATTTTCCAAATGGGTTCTATTGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

87.469

99.268

0.868
  pilC Acinetobacter baylyi ADP1

81.081

99.268

0.805
  pilC Pseudomonas stutzeri DSM 10701

61.055

97.073

0.593
  pilC Legionella pneumophila strain ERS1305867

54.774

97.073

0.532
  pilG Neisseria meningitidis 44/76-A

46.985

97.073

0.456
  pilG Neisseria gonorrhoeae MS11

46.985

97.073

0.456
  pilC Vibrio cholerae strain A1552

43.276

99.756

0.432
  pilC Vibrio campbellii strain DS40M4

41.045

98.049

0.402

Multiple sequence alignment