Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ABEF87_RS01770 Genome accession   NZ_CP156789
Coordinates   358762..360885 (+) Length   707 a.a.
NCBI ID   WP_347455477.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7919     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 353762..365885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF87_RS01750 (ABEF87_01750) pilM 355755..356813 (+) 1059 WP_347455476.1 pilus assembly protein PilM Machinery gene
  ABEF87_RS01755 (ABEF87_01755) pilN 356813..357457 (+) 645 WP_347453499.1 PilN domain-containing protein Machinery gene
  ABEF87_RS01760 (ABEF87_01760) comO 357454..358173 (+) 720 WP_404798943.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABEF87_RS01765 (ABEF87_01765) pilP 358173..358700 (+) 528 WP_034585535.1 pilus assembly protein PilP Machinery gene
  ABEF87_RS01770 (ABEF87_01770) pilQ 358762..360885 (+) 2124 WP_347455477.1 type IV pilus secretin PilQ family protein Machinery gene
  ABEF87_RS01775 (ABEF87_01775) aroK 360922..361458 (+) 537 WP_034585528.1 shikimate kinase AroK -
  ABEF87_RS01780 (ABEF87_01780) aroB 361487..362566 (+) 1080 WP_347455478.1 3-dehydroquinate synthase -
  ABEF87_RS01785 (ABEF87_01785) - 362580..363431 (+) 852 WP_347455479.1 hypothetical protein -

Sequence

Protein


Download         Length: 707 a.a.        Molecular weight: 77159.25 Da        Isoelectric Point: 5.0922

>NTDB_id=1002798 ABEF87_RS01770 WP_347455477.1 358762..360885(+) (pilQ) [Acinetobacter thermotolerans strain ANC 7919]
MNHVFRQFSMGAVAIAVMQAASAQIAITNVVPMQVPGQGTEIRVMFNGLPPQPQAYQLESPSRLILDFEQAQQNLKQGNI
PVATKEANSVDVSSDAQRARLTVNLADAGAFTTRVEGNTFILKINSNSPAAVVQPVVQQAAQGITNIGFQRGAKGEGQVV
IDLASGNTPVDVQQQGTKIVVRALGSKIPAHLTRRLNVNDFATPVSTVDAVNQNGSGVITIQTSDSYEYMAYQTDNKLTI
SLKRPEEKNPLRPKAAHHYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEVPWDQALDIVLKTKNL
DKRRNGNVIWIAPVTELIKAEEEEAKALAQSVKLAPIQTEYIQLNYAKAADIEKLITQNKGASNSGSSNSNNNSDDKESL
LSSRGSISIDARTNTLIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARIVRASTEFTKEIGVKWGVLSQGITNNNHLLVGG
SDTTLWNLREPERNDELGGYTYEIERPQNLNVDLGVTNAAGKIAFGLISLSDFMLDLELSALQADGYGEVISTPKVLTAD
KQKATVESGFEVPYQSTEGSGASATATTEFKDVVLKLDVTPSITPDGKVQMDLDISSDSIAGVTPMGEYYLNKNRLNTNV
LVENGETVVLGGIFEQETLNQQTKVPFLGDIPYLGRLFRKDAKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2124 bp        

>NTDB_id=1002798 ABEF87_RS01770 WP_347455477.1 358762..360885(+) (pilQ) [Acinetobacter thermotolerans strain ANC 7919]
ATGAATCATGTGTTTCGTCAGTTTTCTATGGGGGCAGTTGCGATTGCAGTGATGCAGGCAGCAAGTGCACAAATCGCAAT
CACTAATGTGGTGCCAATGCAGGTTCCTGGACAAGGAACCGAAATTCGTGTGATGTTTAATGGTTTACCGCCACAGCCAC
AAGCTTATCAGCTGGAATCTCCATCACGTTTGATCCTTGATTTTGAACAGGCACAGCAGAACCTGAAACAAGGTAATATT
CCTGTTGCAACAAAAGAAGCAAATTCTGTTGATGTGTCTTCAGATGCACAACGTGCACGTTTAACCGTGAATCTGGCTGA
CGCGGGTGCATTCACGACGCGTGTAGAAGGCAACACCTTTATTTTAAAGATCAATTCTAATAGCCCAGCGGCTGTTGTTC
AGCCAGTAGTTCAACAGGCTGCTCAAGGAATTACCAATATTGGTTTCCAGCGTGGCGCTAAAGGTGAAGGACAAGTCGTC
ATTGATCTGGCGAGTGGTAATACGCCAGTTGATGTACAGCAACAAGGTACTAAAATTGTGGTTCGTGCATTAGGTAGCAA
GATCCCAGCACATTTAACCCGTCGCCTGAATGTGAATGATTTTGCCACACCGGTTTCTACTGTAGATGCAGTCAACCAAA
ATGGTTCAGGTGTGATTACCATTCAGACTTCAGATAGCTATGAATATATGGCGTATCAAACTGATAACAAGCTAACAATC
AGTTTGAAACGTCCAGAAGAGAAAAATCCATTACGTCCTAAAGCAGCACATCATTATACGGGCAAGAAAATTTCTCTAGA
TTTCCAAGATATTGAAGTTCGACGCGTATTGCAGTTGTTAGCGGACTTTACTGATATCAATATGGTCGCTGCGGATAGTG
TGCAAGGTAATATTACTTTACGTCTTAAGGAAGTACCTTGGGATCAAGCGCTGGATATCGTTTTAAAGACTAAAAATCTG
GATAAACGCCGTAATGGGAATGTCATCTGGATCGCACCAGTTACTGAACTGATTAAAGCTGAAGAAGAAGAAGCCAAAGC
ATTAGCTCAAAGTGTGAAGTTGGCTCCGATTCAGACTGAATACATTCAATTGAATTATGCGAAAGCTGCTGATATAGAAA
AACTGATCACCCAAAATAAAGGTGCTTCAAATAGTGGTAGTTCAAATTCAAACAACAATAGTGATGACAAAGAAAGCTTG
CTCAGTTCTCGTGGCTCTATTTCGATTGATGCACGTACCAATACCTTGATTGTGAATGACACCCAGCCATTTATTGATAA
AATCCGCAATATGGTGGATCTACTGGATGTTCAGGTTAAACAGGTGATGGTAGAAGCACGTATTGTTCGAGCTTCAACTG
AATTTACCAAAGAAATTGGTGTTAAATGGGGTGTTTTATCTCAAGGGATCACCAATAATAATCATCTTCTTGTAGGTGGT
AGTGATACAACTTTATGGAATTTACGTGAGCCTGAGAGGAATGATGAGTTAGGTGGTTATACCTATGAAATTGAGCGACC
ACAAAACCTGAATGTTGATTTAGGTGTAACGAATGCTGCCGGTAAAATTGCATTTGGTTTGATTAGTCTCTCGGACTTTA
TGTTGGATCTTGAACTTTCTGCACTACAAGCAGATGGTTATGGAGAGGTGATTTCAACACCGAAAGTACTTACAGCAGAT
AAGCAAAAAGCTACTGTTGAATCAGGTTTTGAAGTGCCATATCAGTCGACTGAGGGAAGTGGTGCTAGCGCAACAGCTAC
AACTGAATTTAAGGATGTGGTACTTAAGCTGGATGTGACTCCAAGCATTACGCCTGATGGAAAAGTGCAAATGGACCTGG
ATATTTCCAGTGACAGTATCGCTGGGGTAACACCAATGGGTGAATACTATCTCAATAAAAACCGTCTGAACACGAATGTT
CTAGTTGAAAATGGTGAAACTGTCGTTCTTGGTGGTATTTTTGAACAGGAAACCTTAAACCAGCAAACTAAAGTACCATT
CCTTGGTGATATTCCATATTTAGGTCGTTTATTCCGTAAGGATGCAAAATCGGATAACAAACGTGAGCTCCTGATTTTTG
TTACCCCTCGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(39-120)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-441)

Bacterial type II and III secretion system protein (Secretin)

(541-699)

Secretin and TonB N terminus short domain (STN)

(291-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.48

100

0.76
  pilQ Acinetobacter baumannii strain A118

74.341

100

0.758
  comQ Acinetobacter baylyi ADP1

70.417

100

0.717
  pilQ Pseudomonas aeruginosa PAK

42.203

98.868

0.417
  pilQ Legionella pneumophila strain ERS1305867

38.129

98.303

0.375
  pilQ Legionella pneumophila strain Lp02

38.129

98.303

0.375

Multiple sequence alignment