Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ABEF87_RS01760 Genome accession   NZ_CP156789
Coordinates   357454..358173 (+) Length   239 a.a.
NCBI ID   WP_404798943.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7919     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 352454..363173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF87_RS01745 (ABEF87_01745) ponA 353057..355588 (-) 2532 WP_347454504.1 penicillin-binding protein PBP1a -
  ABEF87_RS01750 (ABEF87_01750) pilM 355755..356813 (+) 1059 WP_347455476.1 pilus assembly protein PilM Machinery gene
  ABEF87_RS01755 (ABEF87_01755) pilN 356813..357457 (+) 645 WP_347453499.1 PilN domain-containing protein Machinery gene
  ABEF87_RS01760 (ABEF87_01760) comO 357454..358173 (+) 720 WP_404798943.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABEF87_RS01765 (ABEF87_01765) pilP 358173..358700 (+) 528 WP_034585535.1 pilus assembly protein PilP Machinery gene
  ABEF87_RS01770 (ABEF87_01770) pilQ 358762..360885 (+) 2124 WP_347455477.1 type IV pilus secretin PilQ family protein Machinery gene
  ABEF87_RS01775 (ABEF87_01775) aroK 360922..361458 (+) 537 WP_034585528.1 shikimate kinase AroK -
  ABEF87_RS01780 (ABEF87_01780) aroB 361487..362566 (+) 1080 WP_347455478.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27024.58 Da        Isoelectric Point: 4.6463

>NTDB_id=1002796 ABEF87_RS01760 WP_404798943.1 357454..358173(+) (comO) [Acinetobacter thermotolerans strain ANC 7919]
MSEQFEDLGQEPVVAPKNKMTVEKFFQQFNTLDLNNYGSWPIAVKITCWIFIVFVVMMLAYFGLIRGQIEAIAQANAQEQ
NLLNEFRDKDSKLRNLQQYQQQLQEMEARFNQQLEQLPKETEIPGLVEDINLSGVNAGLKFKNIRLEPEVKQEFFIEQPI
SIEATGDYHSFGSFVSGIAGLSRIVTLHDFEITGTANKEKKTDIPVIDYVVKAKTYRYVGNANTNSTADNTAANGQGAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=1002796 ABEF87_RS01760 WP_404798943.1 357454..358173(+) (comO) [Acinetobacter thermotolerans strain ANC 7919]
ATGAGCGAACAATTTGAAGATTTAGGTCAAGAGCCAGTTGTTGCACCGAAAAATAAAATGACGGTGGAGAAGTTTTTCCA
GCAGTTTAATACCCTGGATCTAAATAATTATGGTAGCTGGCCGATCGCAGTTAAAATTACCTGCTGGATTTTTATTGTCT
TTGTGGTAATGATGCTGGCTTATTTTGGTTTGATCCGCGGCCAAATCGAAGCCATTGCACAAGCGAATGCTCAGGAGCAA
AACTTGCTCAATGAGTTCCGTGATAAGGATTCCAAGCTGCGTAACTTGCAACAATATCAGCAACAATTGCAGGAAATGGA
AGCACGTTTTAACCAGCAACTCGAGCAGTTGCCGAAAGAAACAGAAATTCCTGGATTGGTTGAAGATATTAACTTGAGCG
GTGTCAACGCCGGCCTGAAGTTCAAAAATATCCGTCTTGAACCTGAAGTGAAGCAGGAATTCTTTATTGAGCAACCGATC
TCGATTGAAGCAACAGGTGATTATCATTCTTTTGGTTCATTTGTTAGTGGTATTGCAGGTCTGTCACGTATCGTGACACT
GCATGATTTTGAAATTACTGGTACGGCAAACAAAGAGAAGAAAACTGATATTCCAGTGATTGATTATGTGGTGAAAGCAA
AAACTTATCGCTATGTAGGAAACGCTAATACTAATAGTACAGCAGATAATACAGCTGCAAACGGTCAGGGGGCACAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(72-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

66.805

100

0.674
  pilO Acinetobacter baumannii D1279779

69.058

93.305

0.644

Multiple sequence alignment