Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ABEF80_RS01790 Genome accession   NZ_CP156772
Coordinates   364938..367106 (+) Length   722 a.a.
NCBI ID   WP_347456724.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7970     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 359938..372106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF80_RS01770 (ABEF80_01770) pilM 361976..363034 (+) 1059 WP_347455476.1 pilus assembly protein PilM Machinery gene
  ABEF80_RS01775 (ABEF80_01775) pilN 363034..363678 (+) 645 WP_347453499.1 PilN domain-containing protein Machinery gene
  ABEF80_RS01780 (ABEF80_01780) comO 363675..364394 (+) 720 WP_404798961.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABEF80_RS01785 (ABEF80_01785) pilP 364394..364921 (+) 528 WP_034585535.1 pilus assembly protein PilP Machinery gene
  ABEF80_RS01790 (ABEF80_01790) pilQ 364938..367106 (+) 2169 WP_347456724.1 type IV pilus secretin PilQ family protein Machinery gene
  ABEF80_RS01795 (ABEF80_01795) aroK 367143..367679 (+) 537 WP_347454501.1 shikimate kinase AroK -
  ABEF80_RS01800 (ABEF80_01800) aroB 367708..368787 (+) 1080 WP_347456725.1 3-dehydroquinate synthase -
  ABEF80_RS01805 (ABEF80_01805) - 368801..369652 (+) 852 WP_347454499.1 hypothetical protein -

Sequence

Protein


Download         Length: 722 a.a.        Molecular weight: 78898.31 Da        Isoelectric Point: 5.1809

>NTDB_id=1002591 ABEF80_RS01790 WP_347456724.1 364938..367106(+) (pilQ) [Acinetobacter thermotolerans strain ANC 7970]
MNKSFKEFIFGDGNTMNHVFRQFSMGAVAIAVMQAASAQIAITNVVPMQVPGQGTEIRVMFNGLPPQPQAYQLESPSRLI
LDFEQAQQNLKQGNIPVATKEANSVDVSSDAQRARLTVNLADAGAFTTRVEGNTFILKINSNSPAAVVQPVVQQAAQGIT
NIGFQRGAKGEGQVVIDLASGNTPVDVQQQGTKIVVRALGSKIPAHLTRRLNVNDFATPVSTVDAVNQNGSGVITIQTSD
SYEYMAYQTDNKLTISLKRPEEKNPLRPKAAHHYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEV
PWDQALDIVLKTKNLDKRRNGNVIWIAPVTELIKAEEEEAKALAQSVKLAPIQTEYIQLNYAKAADIEKLITQNKGASNS
GSSNSNNNSDDKESLLSSRGSISIDARTNTLIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARIVRASTEFTKEIGVKWGV
LSQGITNNNHLLVGGSDTTLWNLREPERNDELGGYTYEIERPQNLNVDLGVTNAAGKIAFGLISLSDFMLDLELSALQAD
GYGEVISTPKVLTADKQKATVESGFEVPYQSSEGGGINAVAKTEFKDVVLKLDVTPSITPDGKVQMDLDISSDSIAGVTP
MGEYYLNKNKLNTNVLVENGETVVLGGIFEQETLNQQTKVPFLGDIPYLGRLFRKDAKSDNKRELLIFVTPRIVNDSVSR
NH

Nucleotide


Download         Length: 2169 bp        

>NTDB_id=1002591 ABEF80_RS01790 WP_347456724.1 364938..367106(+) (pilQ) [Acinetobacter thermotolerans strain ANC 7970]
ATGAATAAAAGTTTTAAAGAATTTATTTTTGGGGATGGTAATACAATGAATCATGTGTTTCGTCAGTTTTCTATGGGGGC
AGTTGCGATTGCAGTGATGCAGGCAGCAAGTGCACAAATCGCAATCACTAATGTGGTGCCAATGCAGGTTCCTGGACAAG
GAACCGAAATTCGTGTGATGTTTAATGGTTTACCGCCACAGCCACAAGCTTATCAGCTGGAATCTCCATCACGTTTGATC
CTTGATTTTGAACAGGCACAGCAGAACCTGAAACAAGGTAATATTCCTGTTGCAACAAAAGAAGCAAATTCTGTTGATGT
GTCTTCAGATGCACAACGTGCACGTTTAACCGTGAATCTGGCTGACGCGGGTGCATTCACGACGCGTGTAGAAGGCAACA
CCTTTATTTTAAAGATCAATTCTAATAGCCCAGCGGCTGTTGTTCAGCCAGTAGTTCAACAGGCTGCTCAAGGAATTACC
AATATTGGTTTCCAGCGTGGCGCTAAAGGTGAAGGACAAGTCGTCATTGATCTGGCGAGTGGTAATACGCCAGTTGATGT
ACAGCAACAAGGTACTAAAATTGTGGTTCGTGCATTAGGTAGCAAGATCCCAGCACATTTAACCCGTCGCCTGAATGTGA
ATGATTTTGCCACACCGGTTTCTACTGTAGATGCAGTCAACCAAAATGGTTCAGGTGTGATTACCATTCAGACTTCAGAT
AGCTATGAATATATGGCGTATCAAACTGATAACAAGCTAACAATCAGTTTGAAACGTCCAGAAGAGAAAAATCCATTACG
TCCTAAAGCAGCACATCATTATACGGGCAAGAAAATTTCTCTAGATTTCCAAGATATTGAAGTTCGACGCGTATTGCAGT
TGTTAGCGGACTTTACTGATATCAATATGGTCGCTGCGGATAGTGTGCAAGGTAATATTACTTTACGTCTTAAGGAAGTA
CCTTGGGATCAAGCGCTGGATATCGTTTTAAAGACTAAAAATCTGGATAAACGCCGTAATGGGAATGTCATCTGGATCGC
ACCAGTTACTGAACTGATTAAAGCTGAAGAAGAAGAAGCCAAAGCATTAGCTCAAAGTGTGAAGTTGGCTCCGATTCAGA
CTGAATACATTCAATTGAATTATGCGAAAGCTGCTGATATAGAAAAACTGATCACCCAAAATAAAGGTGCTTCAAATAGT
GGTAGTTCAAATTCAAACAACAATAGTGATGACAAAGAAAGCTTGCTCAGTTCTCGTGGCTCTATTTCGATTGATGCACG
TACCAATACCTTGATTGTGAATGACACCCAGCCATTTATTGATAAAATCCGCAATATGGTGGATCTACTGGATGTTCAGG
TTAAACAGGTGATGGTAGAAGCACGTATTGTTCGAGCTTCAACTGAATTTACCAAAGAAATTGGTGTTAAATGGGGTGTT
TTATCTCAAGGGATCACCAATAATAATCATCTTCTTGTAGGTGGTAGTGATACAACTTTATGGAATTTACGTGAGCCTGA
GAGGAATGATGAATTAGGTGGTTATACCTATGAAATTGAGCGACCGCAAAACCTGAATGTTGATTTAGGTGTAACGAATG
CTGCCGGTAAAATTGCTTTTGGTTTAATTAGTCTCTCGGATTTTATGTTGGATCTTGAACTTTCTGCATTACAGGCCGAT
GGTTATGGAGAGGTAATTTCAACACCTAAAGTTTTGACCGCTGACAAGCAAAAAGCCACTGTAGAATCTGGTTTTGAAGT
GCCATATCAATCATCTGAAGGTGGTGGTATAAATGCTGTAGCTAAAACTGAATTCAAGGACGTGGTGCTTAAGCTGGATG
TGACACCAAGTATTACGCCGGACGGAAAAGTGCAAATGGATCTGGATATTTCGAGTGATAGTATTGCCGGGGTAACACCA
ATGGGTGAATACTACTTGAACAAGAACAAGTTAAATACTAATGTTCTAGTTGAAAATGGTGAAACCGTCGTGCTCGGTGG
TATTTTTGAACAGGAAACCCTGAATCAGCAAACGAAAGTGCCTTTCTTAGGAGATATTCCATATCTAGGCCGTTTATTCC
GTAAGGATGCAAAATCGGATAATAAACGTGAGCTCCTGATTTTTGTTACCCCTCGAATTGTTAATGACAGTGTTTCAAGA
AATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(556-714)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-456)

AMIN domain (AMIN)

(54-135)

Secretin and TonB N terminus short domain (STN)

(306-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.786

99.861

0.737
  pilQ Acinetobacter baumannii strain A118

73.648

99.861

0.735
  comQ Acinetobacter baylyi ADP1

69.722

99.723

0.695
  pilQ Pseudomonas aeruginosa PAK

42.06

96.814

0.407
  pilQ Legionella pneumophila strain Lp02

37.986

96.26

0.366
  pilQ Legionella pneumophila strain ERS1305867

37.986

96.26

0.366

Multiple sequence alignment