Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ABEF80_RS01780 Genome accession   NZ_CP156772
Coordinates   363675..364394 (+) Length   239 a.a.
NCBI ID   WP_404798961.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7970     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 358675..369394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF80_RS01765 (ABEF80_01765) ponA 359278..361809 (-) 2532 WP_347456723.1 penicillin-binding protein PBP1a -
  ABEF80_RS01770 (ABEF80_01770) pilM 361976..363034 (+) 1059 WP_347455476.1 pilus assembly protein PilM Machinery gene
  ABEF80_RS01775 (ABEF80_01775) pilN 363034..363678 (+) 645 WP_347453499.1 PilN domain-containing protein Machinery gene
  ABEF80_RS01780 (ABEF80_01780) comO 363675..364394 (+) 720 WP_404798961.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABEF80_RS01785 (ABEF80_01785) pilP 364394..364921 (+) 528 WP_034585535.1 pilus assembly protein PilP Machinery gene
  ABEF80_RS01790 (ABEF80_01790) pilQ 364938..367106 (+) 2169 WP_347456724.1 type IV pilus secretin PilQ family protein Machinery gene
  ABEF80_RS01795 (ABEF80_01795) aroK 367143..367679 (+) 537 WP_347454501.1 shikimate kinase AroK -
  ABEF80_RS01800 (ABEF80_01800) aroB 367708..368787 (+) 1080 WP_347456725.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27008.54 Da        Isoelectric Point: 4.6463

>NTDB_id=1002589 ABEF80_RS01780 WP_404798961.1 363675..364394(+) (comO) [Acinetobacter thermotolerans strain ANC 7970]
MSEQFEDLGQEPVVAPKNKMTVEKFFQQFNTLDPNNYGSWPIAVKITCWIFIVFVVMMLAYFGLIRGQIEAIAQANAQEQ
NLLNEFRDKDSKLRNLQQYQQQLQEMEARFNQQLEQLPKETEIPGLVEDINLSGVNAGLKFKNIRLEPEVKQEFFIEQPI
SIEATGDYHSFGSFVSGIAGLSRIVTLHDFEITGTANKEKKTDIPVIDYVVKAKTYRYVGNANTNSTADNTAANGQGAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=1002589 ABEF80_RS01780 WP_404798961.1 363675..364394(+) (comO) [Acinetobacter thermotolerans strain ANC 7970]
ATGAGCGAACAATTTGAAGATTTAGGTCAAGAGCCAGTTGTTGCACCGAAAAATAAAATGACGGTGGAGAAGTTTTTCCA
GCAGTTTAATACCCTGGATCCAAATAATTATGGTAGCTGGCCGATCGCAGTTAAAATTACCTGCTGGATTTTTATTGTCT
TTGTGGTAATGATGCTGGCTTATTTTGGTTTGATCCGCGGCCAAATCGAAGCCATTGCACAAGCGAATGCTCAGGAGCAA
AACTTGCTCAATGAGTTCCGTGATAAGGATTCCAAGCTGCGTAACTTGCAACAATATCAGCAACAATTGCAGGAAATGGA
AGCACGTTTTAACCAGCAACTCGAGCAGTTGCCGAAAGAAACAGAAATTCCTGGATTGGTTGAAGATATTAACTTGAGCG
GTGTCAACGCCGGCCTGAAGTTCAAAAATATCCGTCTTGAACCTGAAGTGAAGCAGGAATTCTTTATTGAGCAACCGATC
TCGATTGAAGCAACAGGTGATTATCATTCTTTTGGTTCATTTGTTAGTGGTATTGCAGGTCTGTCACGTATCGTGACACT
GCATGATTTTGAAATTACTGGTACGGCAAACAAAGAGAAGAAAACTGATATTCCAGTGATTGATTATGTGGTGAAAGCAA
AAACTTATCGCTATGTAGGAAACGCTAATACTAATAGTACAGCAGATAATACAGCTGCAAACGGTCAGGGGGCACAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(72-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

66.805

100

0.674
  pilO Acinetobacter baumannii D1279779

69.058

93.305

0.644

Multiple sequence alignment