Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ABEF83_RS13670 Genome accession   NZ_CP156768
Coordinates   2784396..2786567 (-) Length   723 a.a.
NCBI ID   WP_347454502.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7974     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2779396..2791567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF83_RS13655 (ABEF83_13655) - 2781850..2782701 (-) 852 WP_347454499.1 hypothetical protein -
  ABEF83_RS13660 (ABEF83_13660) aroB 2782715..2783794 (-) 1080 WP_347454500.1 3-dehydroquinate synthase -
  ABEF83_RS13665 (ABEF83_13665) aroK 2783823..2784359 (-) 537 WP_347454501.1 shikimate kinase AroK -
  ABEF83_RS13670 (ABEF83_13670) pilQ 2784396..2786567 (-) 2172 WP_347454502.1 type IV pilus secretin PilQ Machinery gene
  ABEF83_RS13675 (ABEF83_13675) pilP 2786584..2787111 (-) 528 WP_034585535.1 pilus assembly protein PilP Machinery gene
  ABEF83_RS13680 (ABEF83_13680) comO 2787111..2787830 (-) 720 WP_404798918.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABEF83_RS13685 (ABEF83_13685) pilN 2787827..2788471 (-) 645 WP_347454503.1 PilN domain-containing protein Machinery gene
  ABEF83_RS13690 (ABEF83_13690) pilM 2788471..2789529 (-) 1059 WP_034585542.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 723 a.a.        Molecular weight: 79173.50 Da        Isoelectric Point: 5.1097

>NTDB_id=1002562 ABEF83_RS13670 WP_347454502.1 2784396..2786567(-) (pilQ) [Acinetobacter thermotolerans strain ANC 7974]
MNKSFKEFIFGDGNTMNHVFRQFSMGAVAIAVMQVASAQIAITNVVPMQVPGQGTEIRVMFNGLPPQPQAYQLESPSRLI
LDFEQAQQNLKQGNIPVATKEASSVDVSSDAQRARLTVNLADAGAFTTRVEGNSFILKINSNSPVATAQPVVQQATQGIT
NIGFQRGAKGEGQVVIDLASGNTPVDVQQQGTKIVVRALGSKIPAHLTRRLNVNDFATPVSTVDAVNQNGSGVITIQTSD
SYEYMAYQTDNKLTISLKRPEEKNPLRPKAAHHYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEV
PWDQALDIVLKTKNLDKRRNGNVIWIAPVTELAKAEEEEAKALAQSAKLAPIQTEYMQLSYAKAADIEKLITQNKSAQNS
TSSSSNTSSNEEKESLLSYRGSVSIDARTNTLIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARIVRASTEFTKEIGVKWG
VLSQGITNNNHLLVGGSDTTLWDLREPELDDETGRWKYEIQRPDNLNVDLGVANPAGRIAFGLISLSDFMLDLELSALQA
DGYGEVISTPKVLTADKQKATVESGFEVPYQSTEGSGASATATTEFKDVVLKLDVTPSITPDGKVQMDLNISSDSIAGVT
PMGEYYLNKNRLNTNVLVENGETVVLGGIFEQETLNQQTKVPFLGDIPYLGRLFRKDAKSDNKRELLIFVTPRIVNDSVS
RNH

Nucleotide


Download         Length: 2172 bp        

>NTDB_id=1002562 ABEF83_RS13670 WP_347454502.1 2784396..2786567(-) (pilQ) [Acinetobacter thermotolerans strain ANC 7974]
ATGAATAAAAGTTTTAAAGAATTTATTTTTGGGGATGGTAATACAATGAATCATGTGTTTCGTCAGTTTTCTATGGGGGC
AGTTGCGATTGCAGTGATGCAGGTGGCAAGTGCACAGATCGCAATCACCAATGTGGTGCCAATGCAGGTTCCTGGGCAAG
GAACCGAAATTCGTGTGATGTTTAATGGTTTGCCGCCTCAGCCACAAGCCTATCAGCTGGAATCGCCATCTCGCCTGATT
CTGGATTTTGAACAGGCACAGCAGAATCTGAAACAAGGTAATATTCCTGTTGCAACAAAAGAAGCAAGTTCTGTTGATGT
ATCCTCAGACGCACAACGTGCACGTTTAACGGTGAATCTGGCGGATGCGGGTGCATTTACCACACGTGTCGAAGGCAACA
GCTTTATTTTAAAGATCAATTCTAATAGCCCAGTGGCTACTGCTCAGCCAGTAGTTCAACAGGCTACTCAAGGGATTACC
AATATTGGCTTCCAGCGGGGTGCTAAAGGTGAAGGACAAGTCGTCATTGATCTGGCGAGTGGAAATACACCAGTTGATGT
ACAGCAACAAGGCACTAAGATTGTGGTTCGTGCATTGGGTAGTAAAATTCCTGCCCACCTCACTCGTCGTTTGAATGTTA
ATGATTTCGCGACACCAGTTTCTACTGTGGATGCAGTCAACCAGAATGGTTCAGGCGTAATTACCATTCAGACTTCAGAT
AGTTATGAATATATGGCGTATCAAACTGATAACAAGCTAACGATCAGTTTGAAACGTCCAGAAGAGAAAAATCCGCTACG
TCCTAAAGCAGCTCATCATTATACAGGCAAGAAAATTTCTCTAGATTTCCAGGATATTGAAGTTCGCCGAGTATTGCAGT
TGTTAGCGGACTTTACTGATATCAATATGGTGGCAGCGGATAGCGTACAAGGGAATATTACTTTGCGTCTTAAGGAAGTA
CCTTGGGATCAAGCGCTAGATATTGTTTTAAAGACCAAAAATCTGGATAAACGCCGTAATGGGAATGTTATCTGGATTGC
TCCTGTTACAGAACTAGCGAAAGCTGAAGAAGAAGAAGCGAAAGCATTAGCACAAAGTGCTAAACTTGCCCCAATTCAAA
CTGAATATATGCAGCTTAGTTATGCTAAGGCAGCGGATATTGAAAAGTTAATTACACAAAATAAATCCGCGCAAAATTCT
ACTAGTTCTTCAAGTAATACCTCATCTAATGAAGAAAAAGAAAGTCTATTAAGTTATCGTGGTTCTGTATCTATAGATGC
TCGTACTAACACTTTAATTGTGAATGATACCCAGCCATTTATCGATAAAATTCGTAATATGGTGGATTTACTAGATGTAC
AGGTGAAGCAGGTTATGGTGGAAGCACGTATCGTGCGTGCATCGACTGAATTTACCAAAGAGATTGGGGTGAAATGGGGA
GTTTTATCTCAGGGTATTACCAATAATAATCACCTTCTGGTAGGTGGAAGTGATACCACACTTTGGGATCTGCGCGAACC
TGAATTGGATGATGAAACAGGTCGCTGGAAATATGAAATTCAACGTCCAGATAACCTGAATGTAGACTTGGGGGTTGCGA
ATCCGGCCGGGCGTATTGCATTTGGTTTAATCAGCTTATCTGACTTTATGCTTGATCTTGAACTTTCTGCACTACAAGCA
GATGGTTATGGTGAAGTAATTTCTACGCCAAAAGTACTTACTGCAGACAAGCAAAAAGCTACTGTTGAATCAGGTTTTGA
AGTGCCATATCAGTCGACTGAGGGAAGTGGTGCTAGCGCAACAGCTACAACTGAATTTAAGGATGTAGTACTTAAGCTTG
ATGTGACTCCAAGCATTACGCCTGATGGCAAAGTGCAAATGGATCTGAATATTTCCAGTGACAGTATCGCTGGGGTAACA
CCAATGGGTGAATACTATCTCAATAAAAACCGCCTGAACACGAATGTTCTAGTTGAAAATGGCGAAACAGTAGTGCTTGG
TGGTATTTTTGAACAAGAAACTCTGAATCAGCAGACTAAAGTGCCTTTCTTGGGGGACATTCCTTATTTGGGGCGTTTAT
TCCGCAAAGATGCAAAATCGGATAACAAACGTGAGCTGCTGATTTTTGTTACCCCTCGAATTGTTAATGACAGTGTTTCA
AGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(54-136)

Bacterial type II and III secretion system protein (Secretin)

(557-715)

Secretin and TonB N terminus short domain (STN)

(306-348)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-457)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.648

99.723

0.734
  pilQ Acinetobacter baumannii strain A118

73.509

99.723

0.733
  comQ Acinetobacter baylyi ADP1

70.139

99.585

0.698
  pilQ Pseudomonas aeruginosa PAK

41.501

97.649

0.405
  pilQ Legionella pneumophila strain ERS1305867

38.757

93.499

0.362
  pilQ Legionella pneumophila strain Lp02

38.667

93.361

0.361

Multiple sequence alignment