Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ABEF83_RS13680 Genome accession   NZ_CP156768
Coordinates   2787111..2787830 (-) Length   239 a.a.
NCBI ID   WP_404798918.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7974     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2782111..2792830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF83_RS13660 (ABEF83_13660) aroB 2782715..2783794 (-) 1080 WP_347454500.1 3-dehydroquinate synthase -
  ABEF83_RS13665 (ABEF83_13665) aroK 2783823..2784359 (-) 537 WP_347454501.1 shikimate kinase AroK -
  ABEF83_RS13670 (ABEF83_13670) pilQ 2784396..2786567 (-) 2172 WP_347454502.1 type IV pilus secretin PilQ Machinery gene
  ABEF83_RS13675 (ABEF83_13675) pilP 2786584..2787111 (-) 528 WP_034585535.1 pilus assembly protein PilP Machinery gene
  ABEF83_RS13680 (ABEF83_13680) comO 2787111..2787830 (-) 720 WP_404798918.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABEF83_RS13685 (ABEF83_13685) pilN 2787827..2788471 (-) 645 WP_347454503.1 PilN domain-containing protein Machinery gene
  ABEF83_RS13690 (ABEF83_13690) pilM 2788471..2789529 (-) 1059 WP_034585542.1 pilus assembly protein PilM Machinery gene
  ABEF83_RS13695 (ABEF83_13695) ponA 2789696..2792227 (+) 2532 WP_347454504.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27038.56 Da        Isoelectric Point: 4.6463

>NTDB_id=1002564 ABEF83_RS13680 WP_404798918.1 2787111..2787830(-) (comO) [Acinetobacter thermotolerans strain ANC 7974]
MSEQFEDLGQEPVVAPKNKMTVEKFFQQFNTLDPNNYGSWPIAVKITCWIFIVFVVMMLAYFGLIRGQIEAIAQANAQEQ
NLLNEFRDKDSKLRNLQQYQQQLQEMEARFNQQLEQLPKETEIPGLVEDINLSGVNAGLKFKNIRLEPEVKQEFFIEQPI
SIEATGDYHSFGSFVSGIAGLSRIVTLHDFEITGTANKEKKTDIPVIDYVVKAKTYRYVGNTNTNSTADNTAANGQGAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=1002564 ABEF83_RS13680 WP_404798918.1 2787111..2787830(-) (comO) [Acinetobacter thermotolerans strain ANC 7974]
ATGAGCGAACAATTTGAAGATTTAGGCCAAGAACCTGTTGTTGCACCTAAAAATAAAATGACGGTGGAGAAGTTTTTTCA
GCAGTTTAATACCCTGGATCCAAATAATTATGGTAGTTGGCCGATCGCAGTTAAAATTACCTGCTGGATTTTTATTGTCT
TTGTGGTAATGATGCTGGCTTATTTTGGTTTGATCCGTGGTCAAATCGAAGCCATTGCACAAGCGAATGCTCAGGAGCAA
AACTTGCTCAATGAGTTCCGTGACAAGGATTCCAAGTTGCGTAACTTACAACAATATCAGCAACAATTGCAGGAAATGGA
AGCGCGTTTTAATCAACAGCTGGAGCAGTTGCCGAAAGAAACAGAGATTCCTGGGCTGGTTGAAGACATCAACCTAAGTG
GTGTCAATGCGGGCTTGAAGTTCAAGAATATCCGTCTTGAACCTGAAGTGAAGCAGGAATTCTTTATTGAACAACCGATT
TCGATTGAAGCAACGGGTGATTATCACTCCTTTGGTTCATTTGTTAGTGGTATTGCAGGTCTGTCACGTATCGTGACACT
GCATGACTTTGAAATTACCGGTACAGCAAATAAAGAAAAGAAAACTGATATTCCAGTGATTGATTATGTCGTGAAGGCAA
AAACTTATCGCTATGTAGGAAACACAAATACTAATAGTACAGCAGATAATACAGCTGCAAACGGTCAGGGGGCACAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(72-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

71.56

91.213

0.653
  pilO Acinetobacter baumannii D1279779

69.507

93.305

0.649

Multiple sequence alignment