NT genes of 'Rodentibacter sp. THUN1657'
In this species, transformation by exogenous DNA is regulated by the presence of a specific Uptake Signal Sequence (USS) (PMID: 17038178).
| Gene name | Gene type | Function | Related MGE | Organism | Genome accession | Locus tag | Protein ID |
|---|---|---|---|---|---|---|---|
 comQ |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1657 | NZ_AP038791 | ACMCNI_RS01890 | WP_412763730.1 |
| comP |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1657 | NZ_AP038791 | ACMCNI_RS01895 | WP_226692981.1 |
| comO |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1657 | NZ_AP038791 | ACMCNI_RS01900 | WP_226692716.1 |
| comN |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1657 | NZ_AP038791 | ACMCNI_RS01905 | WP_226692715.1 |
| rec2 |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1657 | NZ_AP038791 | ACMCNI_RS01980 | WP_226692700.1 |
| pilF/pilF2 |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1657 | NZ_AP038791 | ACMCNI_RS02940 | WP_226692532.1 |
| ceuB |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1657 | NZ_AP038791 | ACMCNI_RS03495 | WP_304621902.1 |
| comE1/comEA |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1657 | NZ_AP038791 | ACMCNI_RS04900 | WP_226692204.1 |
| recA |
Machinery gene | Homologous recombination | - | Rodentibacter sp. THUN1657 | NZ_AP038791 | ACMCNI_RS06070 | WP_226692009.1 |
| comM |
Machinery gene | Involve in natural transformation | - | Rodentibacter sp. THUN1657 | NZ_AP038791 | ACMCNI_RS06125 | WP_226691999.1 |
| comE |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1657 | NZ_AP038791 | ACMCNI_RS06140 | WP_226691996.1 |
| comA |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1657 | NZ_AP038791 | ACMCNI_RS06160 | WP_226691992.1 |
| sxy/tfoX |
Regulator | Competence regulation | Prophage | Rodentibacter sp. THUN1657 | NZ_AP038791 | ACMCNI_RS06530 | WP_226691925.1 |
| dprA |
Machinery gene | DNA processing | - | Rodentibacter sp. THUN1657 | NZ_AP038791 | ACMCNI_RS08325 | WP_226691654.1 |
| pilD |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1657 | NZ_AP038791 | ACMCNI_RS08435 | WP_226691636.1 |
| pilC |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1657 | NZ_AP038791 | ACMCNI_RS08440 | WP_226691635.1 |
| pilB |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1657 | NZ_AP038791 | ACMCNI_RS08445 | WP_226691634.1 |
| pilA |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1657 | NZ_AP038791 | ACMCNI_RS08450 | WP_226691633.1 |
| ssb |
Machinery gene | DNA processing | - | Rodentibacter sp. THUN1657 | NZ_AP038791 | ACMCNI_RS09140 | WP_226691554.1 |
Experimentally validated
Bioinformatically predicted