Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   ACMCNI_RS01980 Genome accession   NZ_AP038791
Coordinates   438530..440917 (-) Length   795 a.a.
NCBI ID   WP_226692700.1    Uniprot ID   -
Organism   Rodentibacter sp. THUN1657     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 433530..445917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMCNI_RS01960 (THUN1657_03830) kdsB 434550..435314 (-) 765 WP_226692704.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACMCNI_RS01965 (THUN1657_03840) - 435374..435556 (-) 183 WP_226692703.1 Trm112 family protein -
  ACMCNI_RS01970 (THUN1657_03850) lpxK 435558..436547 (-) 990 WP_226692702.1 tetraacyldisaccharide 4'-kinase -
  ACMCNI_RS01975 (THUN1657_03860) msbA 436723..438471 (-) 1749 WP_374707305.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ACMCNI_RS01980 (THUN1657_03870) rec2 438530..440917 (-) 2388 WP_226692700.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACMCNI_RS01985 (THUN1657_03880) dksA 441168..441605 (+) 438 WP_226692699.1 RNA polymerase-binding protein DksA -
  ACMCNI_RS01990 (THUN1657_03890) pcnB 441884..443218 (+) 1335 WP_374707304.1 polynucleotide adenylyltransferase PcnB -
  ACMCNI_RS01995 (THUN1657_03900) folK 443222..443698 (+) 477 WP_226692698.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ACMCNI_RS02000 (THUN1657_03910) sppA 443988..445841 (-) 1854 WP_226692979.1 signal peptide peptidase SppA -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 90830.64 Da        Isoelectric Point: 10.0447

>NTDB_id=111234 ACMCNI_RS01980 WP_226692700.1 438530..440917(-) (rec2) [Rodentibacter sp. THUN1657]
MPFNVFTLAISIIFASLSLMFLPDFMLIGWKQMLFCHLAFVLTAVFFYWFKKIFAFRFFIYLNIALLALGYAHSFALDLL
RQADEISVQKQPLIFTIEEVLHQQAYQTVIVRTVLKERLGEQRIFLNWKAKERPFLGETWQGEVLLRPLSGRLNFGGFDR
QKWYFSERIIATGTVKSAVKIKSDFSLREKILQKALQQTEGLSLQGLLIALAFGERAWLDKSTQRIYQQTNTAHLIAISG
LHIGLAMGIGFFLIRLMQFFLPTRFIHPFFPLFFGAILALFYAYLAGFALPTFRAISALLFISCIQMARRYYSAFQLFIL
VVAFLLLWDPLMPLSISFWLSVGAVCCLILWYRYVPFSLFQWRHQPFSQKVRWIMRLFHLQFGLLLLFTPLQLFFFNGIA
LSGFFVNLIAVPFYSFFLVPLILFAILTKGAWSSWRLANELAEGITQIIASFQGNWFTVSFNLSLVLTALCSLIFLLIIY
GIYREKRVTQQNWKIKPARFFTLSTSKSSPQIEFKQMIGVSVSIAVLCLLIGAYRQYQKSLWQLDTLDVGQGLATLIVKE
GRGILYDTGAAWQGGSMAELEILPYLQREGIELDKLILSHDDNDHSGGARAILNAYPHLVLMSSSKKNYGETYRTSCIIG
NNWQWQGISFRVLSPEKSVARADNSDSCVILIDDGKHRILLTGDAEMKNEQIFARTLGKLDVLQVGHHGSKTSTGEFLVA
RTKPDISIISSGRWNPWKFPHSSVTERLTHYKSTVENTALSGQIRVGFYQNKITITAARDAFSPWYARVIGLSKE

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=111234 ACMCNI_RS01980 WP_226692700.1 438530..440917(-) (rec2) [Rodentibacter sp. THUN1657]
ATGCCGTTTAATGTATTTACGTTAGCAATCAGCATTATTTTTGCTTCGCTATCATTGATGTTTTTGCCGGATTTTATGTT
AATCGGCTGGAAACAAATGCTGTTCTGTCATTTAGCGTTCGTTCTGACCGCCGTTTTTTTCTATTGGTTCAAAAAAATAT
TTGCTTTTCGTTTTTTTATCTATCTAAATATCGCGCTTTTAGCCTTGGGTTACGCTCATTCTTTTGCCCTTGATTTATTG
CGACAGGCCGATGAAATCTCCGTTCAAAAACAACCGTTGATTTTTACTATTGAAGAAGTATTACATCAGCAAGCGTATCA
AACGGTCATTGTTCGCACGGTACTAAAAGAAAGGCTGGGTGAACAGCGTATTTTTCTTAACTGGAAAGCAAAGGAACGTC
CTTTTTTAGGGGAAACCTGGCAAGGCGAAGTTCTTCTTCGTCCGCTTTCCGGAAGATTGAATTTCGGTGGGTTTGATCGT
CAGAAATGGTATTTTTCCGAAAGGATTATTGCGACAGGAACGGTAAAAAGTGCGGTCAAAATCAAGAGTGATTTTTCATT
ACGGGAGAAAATATTACAAAAAGCATTGCAACAAACTGAAGGTCTTTCTTTACAAGGTCTATTAATTGCCTTAGCTTTTG
GCGAACGGGCATGGCTTGATAAATCAACACAGAGAATTTATCAGCAAACCAATACTGCACATTTAATTGCTATTTCGGGG
CTACATATCGGTTTGGCAATGGGGATTGGTTTTTTTCTGATTCGCTTAATGCAATTTTTTCTTCCAACCCGTTTTATTCA
TCCGTTTTTTCCCTTGTTCTTTGGGGCGATTTTAGCGTTGTTTTACGCTTACCTTGCAGGATTCGCTCTTCCTACTTTTC
GTGCAATTTCTGCCTTGCTCTTTATCTCTTGCATACAAATGGCTAGGCGATATTATTCTGCTTTTCAACTTTTTATTTTA
GTGGTGGCATTTCTTTTATTATGGGATCCGCTTATGCCGCTTTCCATCAGTTTTTGGCTTTCTGTAGGTGCTGTGTGCTG
TTTAATCCTATGGTATCGTTATGTGCCGTTTTCACTTTTTCAATGGCGTCATCAGCCTTTCTCTCAAAAAGTGCGGTGGA
TAATGCGTTTGTTTCATTTGCAGTTTGGTTTGTTACTGTTGTTCACACCGTTACAGCTTTTCTTTTTTAACGGTATTGCA
TTAAGTGGTTTTTTCGTTAATTTAATTGCCGTACCTTTTTATAGTTTTTTCCTTGTGCCTTTGATTCTATTTGCCATATT
GACTAAAGGAGCGTGGTCCTCTTGGAGATTGGCTAATGAATTGGCAGAAGGAATAACACAAATTATCGCTTCCTTTCAAG
GAAATTGGTTCACGGTATCATTTAATTTATCGCTTGTTTTGACCGCACTTTGTAGTTTGATTTTTCTCTTGATCATTTAT
GGAATTTATCGGGAAAAACGGGTAACGCAACAAAATTGGAAAATAAAACCGGCAAGATTTTTCACATTAAGTACGAGCAA
ATCATCTCCGCAGATTGAGTTTAAACAAATGATCGGTGTTTCGGTAAGTATTGCGGTTTTATGTTTATTGATTGGGGCGT
ATCGGCAGTATCAAAAATCGCTTTGGCAGCTTGATACGTTAGATGTAGGGCAGGGCTTGGCAACGTTAATCGTAAAAGAG
GGTAGAGGCATTTTGTATGATACCGGTGCGGCGTGGCAAGGCGGTTCAATGGCTGAATTGGAAATATTGCCTTATTTGCA
ACGTGAAGGAATTGAGTTGGATAAATTGATTTTAAGTCACGATGATAATGATCATTCCGGTGGTGCGAGAGCAATTTTAA
ATGCTTATCCTCATTTGGTGTTGATGAGTTCATCGAAAAAAAATTACGGTGAAACTTACCGCACTTCCTGTATTATAGGA
AACAACTGGCAATGGCAGGGGATTTCATTTCGTGTGCTTTCTCCTGAAAAATCAGTCGCTCGAGCAGATAATTCAGACTC
TTGCGTGATTTTGATTGATGATGGGAAGCATCGTATTTTGCTAACCGGTGATGCTGAAATGAAAAACGAACAAATTTTTG
CCCGCACTTTGGGCAAACTTGATGTATTGCAAGTAGGACACCACGGGAGTAAAACTTCTACGGGAGAATTTTTAGTTGCC
CGAACCAAACCGGATATTTCGATTATTTCCAGCGGTCGTTGGAATCCTTGGAAATTCCCTCATTCTTCGGTAACGGAGCG
TTTAACGCACTATAAAAGTACGGTAGAAAATACGGCGCTTTCAGGGCAGATTCGGGTCGGGTTTTATCAAAATAAGATAA
CAATCACAGCCGCCAGAGACGCTTTTTCGCCTTGGTATGCGCGAGTGATTGGATTATCAAAGGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(548-731)

Domain of unknown function (DUF4131) (DUF4131)

(29-178)

Competence protein (Competence)

(211-479)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

65.704

100

0.658

Multiple sequence alignment