Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACMCNI_RS06530 Genome accession   NZ_AP038791
Coordinates   1405496..1406158 (-) Length   220 a.a.
NCBI ID   WP_226691925.1    Uniprot ID   -
Organism   Rodentibacter sp. THUN1657     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1400496..1411158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMCNI_RS06530 (THUN1657_12460) sxy/tfoX 1405496..1406158 (-) 663 WP_226691925.1 TfoX/Sxy family DNA transformation protein Regulator
  ACMCNI_RS06535 (THUN1657_12470) - 1406644..1407072 (-) 429 WP_226691924.1 F0F1 ATP synthase subunit epsilon -
  ACMCNI_RS06540 (THUN1657_12480) atpD 1407103..1408476 (-) 1374 WP_226691923.1 F0F1 ATP synthase subunit beta -
  ACMCNI_RS06545 (THUN1657_12490) atpG 1408494..1409363 (-) 870 WP_226691922.1 F0F1 ATP synthase subunit gamma -
  ACMCNI_RS06550 (THUN1657_12500) atpA 1409381..1410922 (-) 1542 WP_226691921.1 F0F1 ATP synthase subunit alpha -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25454.94 Da        Isoelectric Point: 10.1136

>NTDB_id=111246 ACMCNI_RS06530 WP_226691925.1 1405496..1406158(-) (sxy/tfoX) [Rodentibacter sp. THUN1657]
MSYLNIKDEHLTETYNLVNGLIGNVSSRHLFTGYGLFYKQELMFGLWLNGKVYLQAKDKLAEQLINMGCIPFTKNEVDAK
FVLSDYYWLSSDILGDKTLLRKLLMISIKQIQDRKNELELLKANRLKDLPNLSIKHERMLKKVGIHDVKTLRAVGAENAI
VRLRKLGIPATLQTYWKLSCALLNKNSEQLTKAQKEILLKKLNKALHEAGFRMYRKIDDE

Nucleotide


Download         Length: 663 bp        

>NTDB_id=111246 ACMCNI_RS06530 WP_226691925.1 1405496..1406158(-) (sxy/tfoX) [Rodentibacter sp. THUN1657]
ATGTCATACTTAAATATTAAAGATGAACACCTTACCGAAACTTATAATTTAGTTAATGGATTGATTGGGAATGTTTCATC
AAGACACCTTTTTACCGGTTATGGATTATTCTATAAACAGGAACTTATGTTCGGTTTGTGGTTGAATGGAAAAGTTTATC
TTCAAGCTAAAGATAAGCTGGCTGAGCAATTGATAAATATGGGATGTATACCATTTACAAAAAATGAGGTAGATGCCAAA
TTTGTTCTGTCCGATTATTATTGGCTTTCTAGTGATATACTCGGCGATAAGACCTTGTTACGTAAGTTGTTAATGATCTC
TATTAAACAGATTCAGGATAGAAAAAATGAGCTTGAATTACTAAAGGCGAACCGTTTAAAGGATCTTCCTAACCTTTCTA
TAAAGCATGAAAGAATGTTAAAGAAGGTAGGGATTCACGATGTTAAGACTCTTCGAGCCGTTGGGGCTGAGAATGCAATT
GTTAGACTAAGGAAACTAGGTATTCCGGCAACATTACAGACTTACTGGAAATTATCTTGTGCACTATTAAACAAAAATAG
TGAGCAGCTAACTAAAGCGCAAAAGGAAATTTTATTGAAAAAATTAAATAAGGCCTTGCATGAAGCTGGGTTTAGAATGT
ATCGAAAGATTGATGATGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(22-110)

TfoX C-terminal domain (TfoX_C)

(123-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

57.604

98.636

0.568

Multiple sequence alignment