Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACMCNI_RS06530 Genome accession   NZ_AP038791
Coordinates   1405496..1406158 (-) Length   220 a.a.
NCBI ID   WP_226691925.1    Uniprot ID   -
Organism   Rodentibacter sp. THUN1657     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1361809..1421898 1405496..1406158 within 0


Gene organization within MGE regions


Location: 1361809..1421898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMCNI_RS06215 (THUN1657_11920) - 1361809..1361946 (-) 138 WP_226691981.1 hypothetical protein -
  ACMCNI_RS06220 (THUN1657_11930) - 1362073..1363197 (+) 1125 WP_226691980.1 AAA family ATPase -
  ACMCNI_RS06225 (THUN1657_11940) - 1363200..1365485 (+) 2286 WP_412763511.1 S8 family peptidase -
  ACMCNI_RS06230 (THUN1657_11950) - 1366249..1367262 (-) 1014 WP_226691977.1 phage portal protein -
  ACMCNI_RS06235 (THUN1657_11960) - 1367274..1369064 (-) 1791 WP_226691976.1 terminase large subunit domain-containing protein -
  ACMCNI_RS06240 (THUN1657_11970) - 1369226..1370059 (+) 834 WP_226691975.1 GPO family capsid scaffolding protein -
  ACMCNI_RS06245 (THUN1657_11980) - 1370110..1371162 (+) 1053 WP_226691974.1 phage major capsid protein, P2 family -
  ACMCNI_RS06250 (THUN1657_11990) gpM 1371167..1371823 (+) 657 WP_226691973.1 phage terminase small subunit -
  ACMCNI_RS06255 (THUN1657_12000) - 1371941..1372450 (+) 510 WP_226691972.1 head completion/stabilization protein -
  ACMCNI_RS06260 (THUN1657_12010) - 1372450..1372659 (+) 210 WP_226691971.1 tail protein X -
  ACMCNI_RS06265 (THUN1657_12020) - 1372664..1372867 (+) 204 WP_226691970.1 HP1 family phage holin -
  ACMCNI_RS06270 (THUN1657_12030) - 1372848..1373366 (+) 519 WP_226691969.1 lysozyme -
  ACMCNI_RS06275 (THUN1657_12040) - 1373351..1373701 (+) 351 WP_226691968.1 chemotaxis protein -
  ACMCNI_RS06280 (THUN1657_12050) lysC 1373670..1373882 (+) 213 WP_255618270.1 Rz1-like lysis system protein LysC -
  ACMCNI_RS06285 (THUN1657_12060) - 1373879..1374094 (+) 216 WP_226691966.1 TraR/DksA C4-type zinc finger protein -
  ACMCNI_RS06290 (THUN1657_12070) - 1374091..1374561 (+) 471 WP_226691965.1 phage tail protein -
  ACMCNI_RS06295 (THUN1657_12080) - 1374561..1375019 (+) 459 WP_226691964.1 phage virion morphogenesis protein -
  ACMCNI_RS06300 (THUN1657_12090) - 1375004..1375303 (-) 300 WP_226691963.1 hypothetical protein -
  ACMCNI_RS06305 (THUN1657_12100) - 1375376..1378303 (+) 2928 WP_226691962.1 phage tail tape measure protein -
  ACMCNI_RS06310 (THUN1657_12110) - 1378382..1378567 (+) 186 WP_226691961.1 hypothetical protein -
  ACMCNI_RS06315 (THUN1657_12120) - 1378560..1378847 (+) 288 WP_226691960.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ACMCNI_RS06320 (THUN1657_12130) - 1378960..1379532 (+) 573 WP_226691959.1 phage baseplate assembly protein V -
  ACMCNI_RS06325 (THUN1657_12140) - 1379529..1379864 (+) 336 WP_226691958.1 GPW/gp25 family protein -
  ACMCNI_RS06330 (THUN1657_12150) - 1379861..1380778 (+) 918 WP_226691957.1 baseplate J/gp47 family protein -
  ACMCNI_RS06335 (THUN1657_12160) - 1380771..1381334 (+) 564 WP_226691956.1 phage tail protein I -
  ACMCNI_RS06340 (THUN1657_12170) - 1381336..1382286 (+) 951 WP_226691955.1 phage tail protein -
  ACMCNI_RS06345 (THUN1657_12180) - 1382300..1383073 (+) 774 WP_226691954.1 DUF4376 domain-containing protein -
  ACMCNI_RS06350 (THUN1657_12190) - 1383066..1383512 (+) 447 WP_226691953.1 enoyl-CoA hydratase -
  ACMCNI_RS06355 (THUN1657_12200) - 1383924..1384424 (+) 501 WP_226692936.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  ACMCNI_RS06360 (THUN1657_12210) - 1384610..1385794 (+) 1185 WP_226691952.1 phage tail sheath protein -
  ACMCNI_RS06365 (THUN1657_12220) - 1385798..1386304 (+) 507 WP_226691951.1 phage major tail tube protein -
  ACMCNI_RS06370 (THUN1657_12230) - 1386362..1386661 (+) 300 WP_226691950.1 phage tail assembly protein -
  ACMCNI_RS06375 - 1386691..1386810 (+) 120 WP_226691949.1 GpE family phage tail protein -
  ACMCNI_RS06380 - 1386976..1387131 (+) 156 WP_226691948.1 hypothetical protein -
  ACMCNI_RS06385 (THUN1657_12240) - 1387150..1387587 (+) 438 WP_226691947.1 phage tail protein -
  ACMCNI_RS06390 (THUN1657_12250) - 1387587..1388765 (+) 1179 WP_226691946.1 phage late control D family protein -
  ACMCNI_RS06395 (THUN1657_12260) - 1388952..1389731 (-) 780 WP_226691945.1 DUF3800 domain-containing protein -
  ACMCNI_RS06400 (THUN1657_12270) - 1389771..1390661 (-) 891 WP_226691944.1 nucleotide-binding protein -
  ACMCNI_RS06405 (THUN1657_12280) - 1390723..1390947 (-) 225 WP_226691943.1 excalibur calcium-binding domain-containing protein -
  ACMCNI_RS06410 (THUN1657_12290) - 1390952..1391578 (-) 627 WP_226691942.1 hypothetical protein -
  ACMCNI_RS06415 (THUN1657_12300) - 1391590..1391997 (-) 408 WP_226691941.1 helix-turn-helix domain-containing protein -
  ACMCNI_RS06420 (THUN1657_12310) - 1392131..1392331 (+) 201 WP_226691940.1 hypothetical protein -
  ACMCNI_RS06425 (THUN1657_12320) - 1392355..1392909 (+) 555 WP_412763533.1 hypothetical protein -
  ACMCNI_RS06430 (THUN1657_12330) - 1392971..1393126 (+) 156 WP_226691938.1 hypothetical protein -
  ACMCNI_RS06435 (THUN1657_12340) - 1393200..1393379 (-) 180 WP_226691937.1 hypothetical protein -
  ACMCNI_RS06440 (THUN1657_12350) - 1393520..1393735 (+) 216 WP_226691936.1 hypothetical protein -
  ACMCNI_RS06445 (THUN1657_12360) - 1393770..1394015 (+) 246 WP_226691935.1 hypothetical protein -
  ACMCNI_RS06450 (THUN1657_12370) - 1394108..1394374 (+) 267 WP_226691934.1 hypothetical protein -
  ACMCNI_RS06455 (THUN1657_12380) - 1394390..1394776 (+) 387 WP_226691933.1 hypothetical protein -
  ACMCNI_RS06460 (THUN1657_12390) - 1394777..1395046 (+) 270 WP_226691932.1 hypothetical protein -
  ACMCNI_RS06465 (THUN1657_12400) - 1395161..1395439 (+) 279 WP_226691931.1 hypothetical protein -
  ACMCNI_RS06470 (THUN1657_12410) - 1395455..1395754 (+) 300 WP_226691930.1 hypothetical protein -
  ACMCNI_RS06475 (THUN1657_12420) - 1395762..1397948 (+) 2187 WP_226691929.1 replication endonuclease -
  ACMCNI_RS06480 (THUN1657_12430) - 1397948..1398448 (+) 501 WP_226691928.1 hypothetical protein -
  ACMCNI_RS06485 (THUN1657_12440) - 1398458..1398781 (+) 324 WP_226691927.1 helix-turn-helix domain-containing protein -
  ACMCNI_RS06490 (THUN1657_12450) - 1398691..1399746 (+) 1056 WP_226691926.1 tyrosine-type recombinase/integrase -
  ACMCNI_RS06530 (THUN1657_12460) sxy/tfoX 1405496..1406158 (-) 663 WP_226691925.1 TfoX/Sxy family DNA transformation protein Regulator
  ACMCNI_RS06535 (THUN1657_12470) - 1406644..1407072 (-) 429 WP_226691924.1 F0F1 ATP synthase subunit epsilon -
  ACMCNI_RS06540 (THUN1657_12480) atpD 1407103..1408476 (-) 1374 WP_226691923.1 F0F1 ATP synthase subunit beta -
  ACMCNI_RS06545 (THUN1657_12490) atpG 1408494..1409363 (-) 870 WP_226691922.1 F0F1 ATP synthase subunit gamma -
  ACMCNI_RS06550 (THUN1657_12500) atpA 1409381..1410922 (-) 1542 WP_226691921.1 F0F1 ATP synthase subunit alpha -
  ACMCNI_RS06555 (THUN1657_12510) atpH 1410937..1411482 (-) 546 WP_226691920.1 F0F1 ATP synthase subunit delta -
  ACMCNI_RS06560 (THUN1657_12520) atpF 1411496..1411966 (-) 471 WP_194811144.1 F0F1 ATP synthase subunit B -
  ACMCNI_RS06565 (THUN1657_12530) atpE 1412015..1412269 (-) 255 WP_005539567.1 F0F1 ATP synthase subunit C -
  ACMCNI_RS06570 (THUN1657_12540) atpB 1412326..1413114 (-) 789 WP_226691919.1 F0F1 ATP synthase subunit A -
  ACMCNI_RS06575 (THUN1657_12550) - 1413137..1413505 (-) 369 WP_226691918.1 ATP synthase subunit I -
  ACMCNI_RS06580 (THUN1657_12560) rsmG 1413629..1414240 (-) 612 WP_226691917.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  ACMCNI_RS06585 (THUN1657_12570) mnmG 1414321..1416210 (-) 1890 WP_226691916.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  ACMCNI_RS06590 (THUN1657_12580) mioC 1416603..1417043 (-) 441 WP_226691915.1 FMN-binding protein MioC -
  ACMCNI_RS06595 (THUN1657_12590) zapB 1417093..1417311 (-) 219 WP_194811152.1 cell division protein ZapB -
  ACMCNI_RS06600 (THUN1657_12600) glpX 1417463..1418476 (+) 1014 WP_226691914.1 class II fructose-bisphosphatase -
  ACMCNI_RS06605 (THUN1657_12610) gyrB 1418675..1421098 (+) 2424 WP_226691913.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ACMCNI_RS06610 (THUN1657_12620) pyrR 1421359..1421898 (+) 540 WP_226691912.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25454.94 Da        Isoelectric Point: 10.1136

>NTDB_id=111246 ACMCNI_RS06530 WP_226691925.1 1405496..1406158(-) (sxy/tfoX) [Rodentibacter sp. THUN1657]
MSYLNIKDEHLTETYNLVNGLIGNVSSRHLFTGYGLFYKQELMFGLWLNGKVYLQAKDKLAEQLINMGCIPFTKNEVDAK
FVLSDYYWLSSDILGDKTLLRKLLMISIKQIQDRKNELELLKANRLKDLPNLSIKHERMLKKVGIHDVKTLRAVGAENAI
VRLRKLGIPATLQTYWKLSCALLNKNSEQLTKAQKEILLKKLNKALHEAGFRMYRKIDDE

Nucleotide


Download         Length: 663 bp        

>NTDB_id=111246 ACMCNI_RS06530 WP_226691925.1 1405496..1406158(-) (sxy/tfoX) [Rodentibacter sp. THUN1657]
ATGTCATACTTAAATATTAAAGATGAACACCTTACCGAAACTTATAATTTAGTTAATGGATTGATTGGGAATGTTTCATC
AAGACACCTTTTTACCGGTTATGGATTATTCTATAAACAGGAACTTATGTTCGGTTTGTGGTTGAATGGAAAAGTTTATC
TTCAAGCTAAAGATAAGCTGGCTGAGCAATTGATAAATATGGGATGTATACCATTTACAAAAAATGAGGTAGATGCCAAA
TTTGTTCTGTCCGATTATTATTGGCTTTCTAGTGATATACTCGGCGATAAGACCTTGTTACGTAAGTTGTTAATGATCTC
TATTAAACAGATTCAGGATAGAAAAAATGAGCTTGAATTACTAAAGGCGAACCGTTTAAAGGATCTTCCTAACCTTTCTA
TAAAGCATGAAAGAATGTTAAAGAAGGTAGGGATTCACGATGTTAAGACTCTTCGAGCCGTTGGGGCTGAGAATGCAATT
GTTAGACTAAGGAAACTAGGTATTCCGGCAACATTACAGACTTACTGGAAATTATCTTGTGCACTATTAAACAAAAATAG
TGAGCAGCTAACTAAAGCGCAAAAGGAAATTTTATTGAAAAAATTAAATAAGGCCTTGCATGAAGCTGGGTTTAGAATGT
ATCGAAAGATTGATGATGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(22-110)

TfoX C-terminal domain (TfoX_C)

(123-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

57.604

98.636

0.568

Multiple sequence alignment