Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   ACMCNI_RS01890 Genome accession   NZ_AP038791
Coordinates   422391..422678 (-) Length   95 a.a.
NCBI ID   WP_412763730.1    Uniprot ID   -
Organism   Rodentibacter sp. THUN1657     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 417391..427678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMCNI_RS01880 (THUN1657_03670) nrdR 418441..418890 (-) 450 WP_226692719.1 transcriptional regulator NrdR -
  ACMCNI_RS01885 (THUN1657_03680) recC 418949..422347 (-) 3399 WP_226692718.1 exodeoxyribonuclease V subunit gamma -
  ACMCNI_RS01890 (THUN1657_03690) comQ 422391..422678 (-) 288 WP_412763730.1 DUF5374 domain-containing protein Machinery gene
  ACMCNI_RS01895 (THUN1657_03700) comP 422671..423354 (-) 684 WP_226692981.1 DUF2572 family protein Machinery gene
  ACMCNI_RS01900 (THUN1657_03710) comO 423351..424055 (-) 705 WP_226692716.1 type II secretion system protein J Machinery gene
  ACMCNI_RS01905 (THUN1657_03720) comN 424060..424575 (-) 516 WP_226692715.1 type II secretion system protein Machinery gene
  ACMCNI_RS01910 (THUN1657_03730) suhB 424774..425577 (+) 804 WP_412763699.1 inositol-1-monophosphatase -
  ACMCNI_RS01915 (THUN1657_03740) - 425704..426597 (+) 894 WP_226692713.1 Fe(3+) dicitrate ABC transporter substrate-binding protein -
  ACMCNI_RS01920 (THUN1657_03750) fecC 426597..427589 (+) 993 WP_226692712.1 iron-dicitrate ABC transporter permease FecC -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10996.74 Da        Isoelectric Point: 10.1067

>NTDB_id=111230 ACMCNI_RS01890 WP_412763730.1 422391..422678(-) (comQ) [Rodentibacter sp. THUN1657]
MNRGMSLVSVMFTLALFSALFLVFSRWTASQRKSAVKIYYDFQALQIAENQSQRQFLGVPCEQYVQQNGVKFRVQCQSDK
VVVRYPKGEFSLKTE

Nucleotide


Download         Length: 288 bp        

>NTDB_id=111230 ACMCNI_RS01890 WP_412763730.1 422391..422678(-) (comQ) [Rodentibacter sp. THUN1657]
GTGAATAGGGGAATGTCGTTGGTTTCCGTAATGTTTACGCTTGCATTGTTTAGTGCGTTATTTTTAGTATTTAGTCGGTG
GACGGCAAGTCAGCGCAAAAGTGCGGTCAAAATCTATTATGATTTTCAAGCGTTACAGATTGCCGAAAATCAGTCGCAAC
GGCAATTTTTAGGCGTGCCTTGTGAGCAATACGTGCAACAAAACGGTGTGAAATTTCGAGTGCAATGCCAAAGTGATAAG
GTGGTGGTTCGGTATCCGAAAGGTGAATTCTCGTTGAAAACCGAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

63.158

100

0.632

Multiple sequence alignment