Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ACMCNI_RS01900 Genome accession   NZ_AP038791
Coordinates   423351..424055 (-) Length   234 a.a.
NCBI ID   WP_226692716.1    Uniprot ID   -
Organism   Rodentibacter sp. THUN1657     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 418351..429055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMCNI_RS01880 (THUN1657_03670) nrdR 418441..418890 (-) 450 WP_226692719.1 transcriptional regulator NrdR -
  ACMCNI_RS01885 (THUN1657_03680) recC 418949..422347 (-) 3399 WP_226692718.1 exodeoxyribonuclease V subunit gamma -
  ACMCNI_RS01890 (THUN1657_03690) comQ 422391..422678 (-) 288 WP_412763730.1 DUF5374 domain-containing protein Machinery gene
  ACMCNI_RS01895 (THUN1657_03700) comP 422671..423354 (-) 684 WP_226692981.1 DUF2572 family protein Machinery gene
  ACMCNI_RS01900 (THUN1657_03710) comO 423351..424055 (-) 705 WP_226692716.1 type II secretion system protein J Machinery gene
  ACMCNI_RS01905 (THUN1657_03720) comN 424060..424575 (-) 516 WP_226692715.1 type II secretion system protein Machinery gene
  ACMCNI_RS01910 (THUN1657_03730) suhB 424774..425577 (+) 804 WP_412763699.1 inositol-1-monophosphatase -
  ACMCNI_RS01915 (THUN1657_03740) - 425704..426597 (+) 894 WP_226692713.1 Fe(3+) dicitrate ABC transporter substrate-binding protein -
  ACMCNI_RS01920 (THUN1657_03750) fecC 426597..427589 (+) 993 WP_226692712.1 iron-dicitrate ABC transporter permease FecC -
  ACMCNI_RS01925 (THUN1657_03760) fecD 427634..428569 (+) 936 WP_374707306.1 Fe(3+) dicitrate ABC transporter permease subunit FecD -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26374.35 Da        Isoelectric Point: 7.9280

>NTDB_id=111232 ACMCNI_RS01900 WP_226692716.1 423351..424055(-) (comO) [Rodentibacter sp. THUN1657]
MLKGQTLLSLMISLAISAALLFVISQFYVDTQIQNQKIFLRLKLQAEIQRTIQLIGKDLRRAGFRALNDKLIESNLNLFE
LDEKGSALIISQANNAAQNSCVLFFYDLDANGCIGEKYTKNTCINGNQNVAKGIEKELFGYKLNGKMIETKQTYKNTIKV
NCQFGECQKALQQSACNAGGGWTDLLDEKEYEITHLQFNRFAEGKGIEIRLGGNLKNYPEIHYETAMVVALWNQ

Nucleotide


Download         Length: 705 bp        

>NTDB_id=111232 ACMCNI_RS01900 WP_226692716.1 423351..424055(-) (comO) [Rodentibacter sp. THUN1657]
ATGTTAAAAGGGCAAACTTTACTTAGCCTAATGATTTCATTGGCAATTTCTGCCGCACTTTTATTCGTGATTTCACAATT
TTATGTGGATACGCAAATTCAAAATCAGAAAATCTTTTTACGTTTAAAATTACAGGCGGAAATTCAACGTACGATCCAAC
TTATCGGCAAAGATCTGCGCCGTGCCGGTTTTCGGGCTCTCAACGATAAATTAATTGAAAGTAATCTGAATTTGTTTGAA
TTAGATGAAAAGGGAAGTGCTTTGATAATTTCTCAGGCGAATAATGCCGCTCAAAATAGCTGTGTTTTGTTCTTTTATGA
TCTTGATGCAAATGGTTGTATCGGTGAAAAATACACTAAAAATACTTGTATCAATGGCAATCAAAATGTCGCAAAAGGTA
TCGAAAAAGAACTTTTCGGTTATAAATTGAATGGCAAAATGATCGAAACCAAGCAAACCTATAAAAATACAATTAAGGTA
AATTGTCAATTCGGTGAATGTCAAAAAGCACTTCAACAAAGTGCCTGTAATGCCGGAGGTGGTTGGACGGATTTACTGGA
CGAAAAGGAATATGAAATTACCCATCTGCAATTTAATCGTTTCGCAGAAGGAAAAGGGATAGAAATTCGGCTCGGCGGTA
ATTTAAAAAATTATCCGGAGATTCACTATGAAACCGCTATGGTGGTGGCACTTTGGAATCAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

64.53

100

0.645

Multiple sequence alignment