NT genes of 'Rodentibacter sp. THUN1656'
In this species, transformation by exogenous DNA is regulated by the presence of a specific Uptake Signal Sequence (USS) (PMID: 17038178).
| Gene name | Gene type | Function | Related MGE | Organism | Genome accession | Locus tag | Protein ID |
|---|---|---|---|---|---|---|---|
 ceuB |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1656 | NZ_AP038788 | ACMCNJ_RS00460 | WP_304621902.1 |
| comE1/comEA |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1656 | NZ_AP038788 | ACMCNJ_RS01860 | WP_226692204.1 |
| recA |
Machinery gene | Homologous recombination | - | Rodentibacter sp. THUN1656 | NZ_AP038788 | ACMCNJ_RS03035 | WP_226692009.1 |
| comM |
Machinery gene | Involve in natural transformation | - | Rodentibacter sp. THUN1656 | NZ_AP038788 | ACMCNJ_RS03090 | WP_226691999.1 |
| comE |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1656 | NZ_AP038788 | ACMCNJ_RS03105 | WP_226691996.1 |
| comA |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1656 | NZ_AP038788 | ACMCNJ_RS03125 | WP_226691992.1 |
| sxy/tfoX |
Regulator | Competence regulation | Prophage | Rodentibacter sp. THUN1656 | NZ_AP038788 | ACMCNJ_RS03495 | WP_226691925.1 |
| dprA |
Machinery gene | DNA processing | - | Rodentibacter sp. THUN1656 | NZ_AP038788 | ACMCNJ_RS05035 | WP_226691654.1 |
| pilD |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1656 | NZ_AP038788 | ACMCNJ_RS05145 | WP_226691636.1 |
| pilC |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1656 | NZ_AP038788 | ACMCNJ_RS05150 | WP_226691635.1 |
| pilB |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1656 | NZ_AP038788 | ACMCNJ_RS05155 | WP_226691634.1 |
| pilA |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1656 | NZ_AP038788 | ACMCNJ_RS05160 | WP_226691633.1 |
| ssb |
Machinery gene | DNA processing | - | Rodentibacter sp. THUN1656 | NZ_AP038788 | ACMCNJ_RS05660 | WP_226691554.1 |
| comQ |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1656 | NZ_AP038788 | ACMCNJ_RS09655 | WP_226692717.1 |
| comP |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1656 | NZ_AP038788 | ACMCNJ_RS09660 | WP_226692981.1 |
| comO |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1656 | NZ_AP038788 | ACMCNJ_RS09665 | WP_226692716.1 |
| comN |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1656 | NZ_AP038788 | ACMCNJ_RS09670 | WP_226692715.1 |
| rec2 |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1656 | NZ_AP038788 | ACMCNJ_RS09745 | WP_226692700.1 |
| pilF/pilF2 |
Machinery gene | DNA binding and uptake | - | Rodentibacter sp. THUN1656 | NZ_AP038788 | ACMCNJ_RS10710 | WP_226692532.1 |
Experimentally validated
Bioinformatically predicted