Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMCNJ_RS05150 Genome accession   NZ_AP038788
Coordinates   1100981..1102201 (-) Length   406 a.a.
NCBI ID   WP_226691635.1    Uniprot ID   -
Organism   Rodentibacter sp. THUN1656     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1095981..1107201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMCNJ_RS05120 (THUN1656_09670) - 1096966..1097496 (-) 531 WP_005695476.1 inorganic diphosphatase -
  ACMCNJ_RS05125 (THUN1656_09680) - 1097771..1099087 (+) 1317 WP_226691639.1 NCS2 family permease -
  ACMCNJ_RS05130 (THUN1656_09690) - 1099186..1099467 (-) 282 WP_226691638.1 GNAT family N-acetyltransferase -
  ACMCNJ_RS05135 (THUN1656_09700) yacG 1099464..1099670 (-) 207 WP_226691637.1 DNA gyrase inhibitor YacG -
  ACMCNJ_RS05140 (THUN1656_09710) coaE 1099663..1100283 (-) 621 WP_226692923.1 dephospho-CoA kinase -
  ACMCNJ_RS05145 (THUN1656_09720) pilD 1100283..1100984 (-) 702 WP_226691636.1 prepilin peptidase Machinery gene
  ACMCNJ_RS05150 (THUN1656_09730) pilC 1100981..1102201 (-) 1221 WP_226691635.1 type II secretion system F family protein Machinery gene
  ACMCNJ_RS05155 (THUN1656_09740) pilB 1102203..1103582 (-) 1380 WP_226691634.1 GspE/PulE family protein Machinery gene
  ACMCNJ_RS05160 (THUN1656_09750) pilA 1103579..1104016 (-) 438 WP_226691633.1 prepilin peptidase-dependent pilin Machinery gene
  ACMCNJ_RS05165 (THUN1656_09760) ampD 1104132..1104695 (+) 564 WP_226691632.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACMCNJ_RS05170 (THUN1656_09770) rppH 1105212..1105796 (+) 585 WP_226691631.1 RNA pyrophosphohydrolase -
  ACMCNJ_RS05175 (THUN1656_09780) lgt 1105928..1106728 (+) 801 WP_374707287.1 prolipoprotein diacylglyceryl transferase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 46163.36 Da        Isoelectric Point: 9.8391

>NTDB_id=111215 ACMCNJ_RS05150 WP_226691635.1 1100981..1102201(-) (pilC) [Rodentibacter sp. THUN1656]
MAKKCFHYQAQNALKQIQKGVIIADSHQQAQFQLMNRGLTNIKLQQNWQLNTKPKNTEISTVLNQLATLLQAAIPLKNSL
QILQQNCTQIALNTWLEQLLRSIESGYSFSQSIEQQGKYLTQQEIQLIQVGEMTGKLAIVCNKIAAHRCQSLALQRKLQK
IMLYPSMVLGISLLLTISLLIFIVPQFAEMYQSNNADLPVLTNVLLVMSNFLKNDIGKLALTLLIFWLLYYFKLKHSPMF
QQQKTRIIRATPIFGNIQQLSRLVNFSQSLYIMLQAGIPLNQALNSFLPHTQSWQTKKSIVSDQILDTEVRSILQWVSQG
YSFSDSVSSNLFPMEAQQMLQIGEKSGKLALMLQHIAENYQEKLNHQIDLLSQMLEPLMMVVIGSLIGIIMMGMYLPIFN
MGSVVQ

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=111215 ACMCNJ_RS05150 WP_226691635.1 1100981..1102201(-) (pilC) [Rodentibacter sp. THUN1656]
ATGGCAAAAAAATGCTTTCATTACCAAGCACAAAACGCCTTAAAACAAATACAAAAAGGCGTGATTATCGCCGATTCTCA
TCAACAAGCCCAATTCCAATTAATGAATCGGGGACTTACCAATATCAAACTGCAACAAAATTGGCAACTCAATACTAAGC
CAAAAAATACCGAAATCAGTACGGTATTGAACCAACTTGCAACCTTGCTACAAGCCGCGATTCCACTCAAAAACAGTTTA
CAAATCTTACAACAAAACTGTACTCAGATTGCCCTAAACACTTGGCTTGAACAACTTTTGAGAAGCATTGAATCCGGCTA
TTCTTTTTCTCAAAGTATCGAGCAACAGGGAAAATATCTTACACAGCAAGAAATTCAGCTAATTCAAGTGGGTGAAATGA
CAGGTAAATTAGCCATTGTTTGTAACAAAATTGCGGCACATCGCTGCCAATCTTTAGCACTACAACGTAAATTACAGAAA
ATTATGCTTTATCCCTCAATGGTATTAGGTATTTCTCTCTTGCTCACTATTTCCTTACTAATTTTTATCGTGCCGCAATT
TGCCGAAATGTATCAGAGCAACAATGCGGATTTGCCCGTATTAACGAATGTATTACTTGTGATGTCTAATTTTCTTAAAA
ATGATATAGGAAAGTTAGCCTTAACGCTCCTCATATTTTGGTTGCTTTATTATTTCAAACTGAAACATTCTCCCATGTTT
CAACAACAAAAAACACGAATTATTAGGGCAACACCTATTTTCGGCAATATCCAACAACTTTCCCGTTTAGTGAATTTCAG
CCAAAGTCTGTACATTATGTTGCAAGCGGGAATCCCTCTCAACCAAGCCTTAAATAGTTTTTTACCGCACACACAAAGTT
GGCAAACGAAAAAAAGCATAGTGAGTGATCAAATTCTCGATACTGAAGTGCGGTCAATTTTACAATGGGTTTCACAGGGT
TATTCATTTTCAGATAGCGTAAGCAGTAATCTATTCCCGATGGAAGCACAGCAAATGCTACAAATTGGTGAGAAAAGCGG
AAAACTTGCTTTAATGTTGCAACATATTGCAGAAAACTATCAAGAAAAGCTTAATCATCAAATTGATTTATTATCACAAA
TGCTGGAACCACTAATGATGGTCGTTATCGGAAGCCTAATCGGTATCATTATGATGGGTATGTATTTACCGATTTTTAAT
ATGGGATCGGTGGTGCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(266-397)

Type II secretion system (T2SS), protein F (T2SSF)

(63-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

78.818

100

0.788
  pilC Haemophilus influenzae 86-028NP

78.079

100

0.781
  pilC Glaesserella parasuis strain SC1401

38.404

98.768

0.379

Multiple sequence alignment