Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   ACMCNJ_RS09655 Genome accession   NZ_AP038788
Coordinates   2113924..2114199 (-) Length   91 a.a.
NCBI ID   WP_226692717.1    Uniprot ID   -
Organism   Rodentibacter sp. THUN1656     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2108924..2119199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMCNJ_RS09645 (THUN1656_18330) nrdR 2109974..2110423 (-) 450 WP_226692719.1 transcriptional regulator NrdR -
  ACMCNJ_RS09650 (THUN1656_18340) recC 2110482..2113880 (-) 3399 WP_226692718.1 exodeoxyribonuclease V subunit gamma -
  ACMCNJ_RS09655 (THUN1656_18350) comQ 2113924..2114199 (-) 276 WP_226692717.1 DUF5374 domain-containing protein Machinery gene
  ACMCNJ_RS09660 (THUN1656_18360) comP 2114204..2114887 (-) 684 WP_226692981.1 DUF2572 family protein Machinery gene
  ACMCNJ_RS09665 (THUN1656_18370) comO 2114884..2115588 (-) 705 WP_226692716.1 type II secretion system protein J Machinery gene
  ACMCNJ_RS09670 (THUN1656_18380) comN 2115593..2116108 (-) 516 WP_226692715.1 type II secretion system protein Machinery gene
  ACMCNJ_RS09675 (THUN1656_18390) suhB 2116307..2117110 (+) 804 WP_226692714.1 inositol-1-monophosphatase -
  ACMCNJ_RS09680 (THUN1656_18400) - 2117237..2118130 (+) 894 WP_226692713.1 Fe(3+) dicitrate ABC transporter substrate-binding protein -
  ACMCNJ_RS09685 (THUN1656_18410) fecC 2118130..2119122 (+) 993 WP_226692712.1 iron-dicitrate ABC transporter permease FecC -

Sequence

Protein


Download         Length: 91 a.a.        Molecular weight: 10538.21 Da        Isoelectric Point: 9.8592

>NTDB_id=111222 ACMCNJ_RS09655 WP_226692717.1 2113924..2114199(-) (comQ) [Rodentibacter sp. THUN1656]
MSLVSVMFTLALFSALFLVFSRWTASQRKSAVKIYYDFQALQIAENQSQRQFLGVPCEQYVQQNGVKFRVQCQSDKVVVR
YPKGEFSLKTE

Nucleotide


Download         Length: 276 bp        

>NTDB_id=111222 ACMCNJ_RS09655 WP_226692717.1 2113924..2114199(-) (comQ) [Rodentibacter sp. THUN1656]
ATGTCGTTGGTTTCCGTAATGTTTACGCTTGCATTGTTTAGTGCGTTATTTTTAGTATTTAGTCGGTGGACGGCAAGTCA
GCGCAAAAGTGCGGTCAAAATCTATTATGATTTTCAAGCGTTACAGATTGCCGAAAATCAGTCGCAACGGCAATTTTTAG
GCGTGCCTTGTGAGCAATACGTGCAACAAAACGGTGTGAAATTTCGAGTGCAATGCCAAAGTGATAAGGTGGTGGTTCGG
TATCCGAAAGGTGAATTCTCGTTGAAAACCGAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(49-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

62.637

100

0.626

Multiple sequence alignment