Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMCNJ_RS05660 Genome accession   NZ_AP038788
Coordinates   1214203..1214703 (+) Length   166 a.a.
NCBI ID   WP_226691554.1    Uniprot ID   -
Organism   Rodentibacter sp. THUN1656     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1209203..1219703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMCNJ_RS05655 (THUN1656_10650) uvrA 1211218..1214049 (-) 2832 WP_226691555.1 excinuclease ABC subunit UvrA -
  ACMCNJ_RS05660 (THUN1656_10660) ssb 1214203..1214703 (+) 501 WP_226691554.1 single-stranded DNA-binding protein Machinery gene
  ACMCNJ_RS05665 (THUN1656_10670) dapF 1214787..1215611 (-) 825 WP_226691553.1 diaminopimelate epimerase -
  ACMCNJ_RS05670 (THUN1656_10680) lexA 1215912..1216538 (-) 627 WP_226691552.1 transcriptional repressor LexA -
  ACMCNJ_RS05675 (THUN1656_10690) plsB 1216696..1219125 (+) 2430 WP_226691551.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18693.62 Da        Isoelectric Point: 5.2649

>NTDB_id=111220 ACMCNJ_RS05660 WP_226691554.1 1214203..1214703(+) (ssb) [Rodentibacter sp. THUN1656]
MAGVNKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREITEWHRIVFYRRQAEICGEYLRKGSQIYVEG
RLRTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGYGAPDMGQSTLQPSYQARPNNNQPSRPVQQQAAPQAEPPMDGF
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=111220 ACMCNJ_RS05660 WP_226691554.1 1214203..1214703(+) (ssb) [Rodentibacter sp. THUN1656]
ATGGCTGGAGTAAATAAGGTCATCATCGTAGGTCATTTAGGCAATGATCCGGAAATTCGTACTATGCCGAACGGCGATGC
CGTAGCAAACATTAGCGTTGCGACAAGTGAAAGTTGGAATGATCGCAACACCGGTGAACGTCGTGAAATTACAGAATGGC
ATCGCATTGTATTCTATCGTCGCCAAGCGGAAATCTGCGGTGAATACTTACGCAAAGGCTCACAAATCTATGTTGAAGGG
CGTTTACGCACCCGTAAATGGCAAGATCAGAACGGTCAAGATCGCTATACTACAGAGATTCAAGGTGATGTAATGCAAAT
GCTGGGTGGACGTAATCAAAACGCCGGTGGCTACGGCGCACCGGATATGGGACAAAGCACACTACAACCATCTTACCAAG
CCCGTCCAAACAATAATCAGCCATCCCGCCCTGTTCAACAACAAGCAGCGCCACAAGCCGAACCACCAATGGATGGCTTT
GATGATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

66.111

100

0.717
  ssb Vibrio cholerae strain A1552

56.897

100

0.596
  ssb Neisseria meningitidis MC58

51.429

100

0.542
  ssb Neisseria gonorrhoeae MS11

50.857

100

0.536
  ssbA Bacillus subtilis subsp. subtilis str. 168

34.483

100

0.361

Multiple sequence alignment