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 Relaxase  Auxiliary DNA-binding protein          Crystal structure of complex

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#       Auxiliary DNA-binding protein GenBank Length Pfam PDB ID
1 experimental TraJ_RP4  CAA38338 123 aa
2 experimental TraH_RP4  CAA38335 119 aa
3 experimental TraK_RP4  CAA38339 134 aa DUF5338  _
4 experimental TraH_RK2  CAJ85726 119 aa DUF5338  _
5 experimental TraJ_RK2  CAJ85728 123 aa DUF5338  _
6 experimental TraK_RK2  CAJ85729 134 aa DUF5338  _
7 experimental MobB_RSF1010  AAA26446 137 aa Mobilization_B  _
8 experimental MobC_RSF1010  AAA26444 94 aa Mobilization_B  _
9 experimental TraM_pED208  CAA42174 127 aa Tra_M  _
10 experimental TraY_pED208  CAA42176 20 aa Tra_M  _
11 experimental TrwA_R388  YP_009182121 121 aa Tra_M  _
12 experimental MobB_R1162  _ _ Tra_M  _
13 experimental MobC_R1162  _ _ Tra_M  _
14 experimental TraK_pCU1  AAD27540 138 aa Tra_M  _
15 in_silico TraK_R46  NP_511203 138 aa Tra_M  _
16 experimental TraM_R100  NP_052944 127 aa Tra_M  _
17 experimental TraY_R100  NP_052946 75 aa TraY  _
18 in_silico TraH_pB10  CAD97515 130 aa TraY  _
19 in_silico TraJ_pB10  CAD97517 124 aa TraY  _
20 in_silico TraK_pB10  CAD97518 132 aa DUF5338  _
21 experimental NikA_R64  NP_863435 110 aa DUF5338  _
22 in_silico TraM_pSU316  CAA39377 127 aa Tra_M  _
23 in_silico MobB_pDN1  NP_073213 136 aa Mobilization_B  _
24 in_silico MobC_pDN1  NP_073211 99 aa Mobilization_B  _
25 in_silico TraH_pB4  CAD24396 136 aa Mobilization_B  _
26 in_silico TraJ_pB4  CAD24398 123 aa Mobilization_B  _
27 in_silico TraK_pB4  CAD24399 137 aa DUF5338  _
28 in_silico NikA_R621a  YP_004823732 111 aa DUF5338  _
29 in_silico TraC_pRi2659  YP_001961051 102 aa TraC  _
30 in_silico TraD_pRi2659  YP_001961050 71 aa TraD  _
31 in_silico TraM_p1658/97  NP_862916 127 aa Tra_M  _
32 in_silico TraY_p1658/97  NP_862918 131 aa TraY   TraY  _
33 experimental TraM_F  NP_061450 127 aa Tra_M  _
34 experimental TraY_F  NP_061452 131 aa TraY   TraY  _
35 in_silico NikA_pEK204  ACQ42156 110 aa TraY   TraY  _
36 in_silico NikA_pSTM709  YP_009023752 110 aa TraY   TraY  _
37 in_silico NikA_pV404  CDW92101 110 aa TraY   TraY  _
38 in_silico TraC_pAoF64/95  AFX65722 98 aa TraC  _
39 in_silico TraD_pAoF64/95  AFX65721 71 aa TraD  _
40 in_silico TraH_pEST4011  NP_990930 108 aa TraD  _
41 in_silico TraJ_pEST4011  NP_990932 129 aa TraD  _
42 in_silico TraK_pEST4011  NP_990933 132 aa DUF5338  _
43 in_silico TraH_pTB11  CAG30902 119 aa DUF5338  _
44 in_silico TraJ_pTB11  CAG30903 123 aa DUF5338  _
45 in_silico TraK_pTB11  CAG30904 134 aa DUF5338  _
46 in_silico TraH_BRA100  AFJ38145 130 aa DUF5338  _
47 in_silico TraJ_BRA100  AFJ38146 124 aa DUF5338  _
48 in_silico TraK_BRA100  AFJ38147 132 aa DUF5338  _
49 in_silico TraH_pBS228  YP_758720 119 aa DUF5338  _
50 in_silico TraJ_pBS228  YP_758722 123 aa DUF5338  _
51 in_silico TraK_pBS228  YP_758723 134 aa DUF5338  _
52 in_silico TraH_pTP6  CAJ15630 130 aa DUF5338  _
53 in_silico TraJ_pTP6  CAJ15632 124 aa DUF5338  _
54 in_silico TraK_pTP6  CAJ15633 132 aa DUF5338  _
55 in_silico TraK_pKP96  YP_002332895 138 aa DUF5338  _
56 in_silico TraH_pJP4  AAR31099 130 aa DUF5338  _
57 in_silico TraJ_pJP4  AAR31101 105 aa DUF5338  _
58 in_silico TraK_pJP4  AAR31102 132 aa DUF5338  _
59 in_silico TraC_pTi-SAKURA  NP_053348 98 aa TraC  _
60 in_silico TraD_pTi-SAKURA  NP_053347 71 aa TraD  _
61 in_silico NikA_pIFM3804  YP_008998776 110 aa TraD  _
62 in_silico MobC_pKLH80  CCW43459 121 aa MobC  _
63 in_silico MobC_pLB1  BAF30459 183 aa MobC  _
64 in_silico TraK_N3  YP_004558185 138 aa MobC  _
65 in_silico MobC_pPsv48C  YP_006962035 241 aa RHH_1  _
66 in_silico MobC_pPsv48B  YP_006961622 116 aa RHH_1  _
67 in_silico TraK_pNL194  YP_003813079 138 aa RHH_1  _
68 in_silico MobB_pHDC  YP_001789041 196 aa RHH_1  _
69 in_silico MobC_pHDC  YP_001789039 111 aa MobC  _
70 in_silico TaxA_pOLA52  YP_001693208 181 aa MobC  _
71 in_silico TraC_pRi1724  NP_066692 97 aa TraC  _
72 in_silico TraD_pRi1724  NP_066691 71 aa TraD  _
73 in_silico MobB_pRA2  YP_025348 104 RHH_1  _
74 in_silico MobC_pRA2  YP_025349 116 RHH_1  _
75 in_silico MobC_pRAS3.1  NP_387451 118 aa RHH_1  _
76 in_silico NikA_ColIb-P9  NP_052500 110 aa RHH_1  _
77 in_silico TraH_pMAB01  AGJ01257 130 aa RHH_1  _
78 in_silico TraJ_pMAB01  AGJ01258 124 aa RHH_1  _
79 in_silico TraK_pMAB01  AGJ01259 132 aa DUF5338  _
80 in_silico MobC_pSJ7.4  AAO45531 98 aa DUF5338  _
81 in_silico MobB2_pIP1630  AAD02406 269 aa DUF334  _
82 in_silico MobC2_pIP1630  AAD02403 127 aa MobC  _
83 in_silico MobB1_pIP1629  AAD02379 269 aa DUF334  _
84 in_silico MobC1_pIP1629  AAD02376 127 aa MobC  _
85 in_silico MobB_pRJ6  YP_002302330 261 aa MobC  _
86 in_silico MobC_pRJ6  YP_002302333 127 aa MobC  _
87 in_silico MobC_pIE1120  AAC72342 94 aa MobC  _
88 in_silico TraM_pSU233  CAA39383 127 aa Tra_M  _
89 in_silico TraC_pRiA4b  BAB47248 97 aa TraC  _
90 in_silico TraD_pRiA4b  BAB47247 71 aa TraD  _
91 in_silico TraM_pEC958  CDN85382 127 aa Tra_M  _
92 in_silico TraY_pEC958  CDN85384 75 aa TraY  _
93 in_silico TrwA_pHH2-227  AEY63617 121 aa TraY  _
94 in_silico TraJ_pVCR94deltaX  AHC56420 209 aa DUF4400  _
95 in_silico NikA_pKPC-LKEc  AGS77391 110 aa DUF4400  _
96 in_silico ORF4_pTF4.1  NP_052136 121 aa MobC  _
97 in_silico MobB_pAsa2  AAP69895 154 aa MbeB_N  _
98 in_silico MobC_pAsa2  AAP69893 105 aa MobC  _
99 in_silico MobD_pAsa2  AAP69896 74 aa MbeD_MobD  _
100 in_silico MobB_pAsa3  AAP69903 185 aa MbeD_MobD  _
101 in_silico MobC_pAsa3  AAP69901 136 aa MobC  _
102 in_silico MobD_pAsa3  AAP69904 102 aa MobC  _
103 in_silico MobB_pAsa1  AAP69888 177 aa MobC  _
104 in_silico MobC_pAsa1  AAP69886 136 aa MobC  _
105 in_silico MobD_pAsa1  AAP69889 113 aa MobC  _
106 in_silico MobB_pCTXM360  YP_002333287 105 aa MobC  _
107 in_silico MobC_pCTXM360  YP_002333286 121 aa MobC  _
108 in_silico TraH_pKS208  AFS51579 142 aa MobC  _
109 in_silico TraJ_pKS208  AFS51558 124 aa MobC  _
110 in_silico TraK_pKS208  AFS51559 150 aa DUF5338  _
111 in_silico TraH_pMBUI1  AFS51494 139 aa DUF5338  _
112 in_silico TraJ_pMBUI1  AFS51495 140 aa DUF5338  _
113 in_silico TraK_pMBUI1  AFS51496 142 aa DUF5338  _
114 in_silico TraJ_QKH54  CAJ43359 118 aa DUF5338  _
115 in_silico TraK_QKH54  CAJ43360 142 aa DUF5338  _
116 in_silico TraH_QKH54  CAJ43357 139 aa DUF5338  _
117 in_silico MobB_Rms149  YP_245458 103 aa RHH_1  _
118 in_silico MobC_Rms149  YP_245459 118 aa RHH_1  _
119 in_silico MobB_pMdT1  YP_006957895 161 aa MbeB_N  _
120 in_silico MobC_pMdT1  YP_006957896 107 aa MobC  _
121 experimental TrwA_pIE321  YP_001911164 120 aa MobC  _
122 in_silico MobA_pU302S  YP_194806 107 aa MobC  _
123 in_silico MobX_pSC101  NP_044283 194 aa MobC  _
124 in_silico TraH_pA81  YP_195892 136 aa MobC  _
125 in_silico TraJ_pA81  YP_195893 123 aa MobC  _
126 in_silico TraK_pA81  YP_195894 139 aa DUF5338  _
127 in_silico TraJ_pSF301-2  YP_006961078 99 aa DUF5338  _
128 in_silico MobC_2s-pEI2  YP_007459741 111 aa MobC  _
129 in_silico MobB_pHE1  _ MobC  _
130 in_silico MobC_pHE1  _ MobC  _
131 in_silico MobB_pRSB105  ABI20468 103 aa RHH_1  _
132 in_silico MobC_pRSB105  ABI20467 118 aa RHH_1  _
133 in_silico MobB_pREN  YP_006960895 243 aa RHH_1  _
134 in_silico MobC_pREN  YP_006960894 112 aa MobC  _
135 in_silico MobB_pLJ42  YP_006960784 229 aa MobC  _
136 in_silico MobC_pLJ42  YP_006960782 112 aa MobC  _
137 in_silico MobB_pEC34B  YP_006953585 172 aa MbeB_N  _
138 in_silico MobC_pEC34B  YP_006953586 115 aa MobC  _
139 in_silico Mob_pEC34A  YP_006953579 115 aa MobC  _
140 in_silico TaxA_pE001  YP_006953020 204 aa MobC  _
141 in_silico MobC_pGNB2  ABE98194 143 aa MobC  _
142 in_silico Ddp1_pMAS2027  YP_003292209 204 aa MobC  _
143 in_silico MobB_pLB925A03  YP_002790960 222 aa MobC  _
144 in_silico MobC_pLB925A03  YP_002790958 112 aa MobC  _
145 in_silico TraC_pTiBo542  AAZ50585 98 aa TraC  _
146 in_silico TraD_pTiBo542  AAZ50584 71 aa TraD  _
147 in_silico TraA_NAH7  YP_534813 130 aa TraD  _
148 in_silico MbkB_pColK-K235  YP_214177 186 aa MbeB_N  _
149 in_silico MbkC_pColK-K235  YP_214175 67 aa MbeB_N  _
150 in_silico A46_pPMA4326A  YP_025664 241 aa MbeB_N  _
151 in_silico TraH_pUO1  NP_904300 130 aa MbeB_N  _
152 in_silico TraJ_pUO1  NP_904301 124 aa MbeB_N  _
153 in_silico TraK_pUO1  NP_904302 132 aa DUF5338  _
154 in_silico TraH_pKJK5  CAK02687 120 aa DUF5338  _
155 in_silico TraJ_pKJK5  CAK02688 124 aa DUF5338  _
156 in_silico TraK_pKJK5  CAK02689 129 aa DUF5338  _
157 in_silico TraA_pWW0  NP_542913 127 aa DUF5338  _
158 in_silico MobC_pRAS3.2  NP_387458 118 aa DUF5338  _
159 in_silico MobB_pMD136  NP_037563 196 aa DUF5338  _
160 in_silico MobC_pMD136  NP_037561 73 aa MobC  _
161 in_silico MobB_pNZ4000  NP_053038 207 aa MobC  _
162 in_silico MobC_pNZ4000  NP_053039 200 aa Fic  _
163 in_silico MobC_pWES-1  ACJ65154 128 aa MobC  _
164 in_silico TrwA_pSa  ABZ82007 121 aa MobC  _
165 experimental MobB_pEC3  BAA08131 161 aa MbeB_N  _
166 experimental MobC_pEC3  BAA08129 114 aa MobC  _
167 in_silico MobS_pTF1  CAA36926 98 aa MobC  _
168 in_silico TraH_R751  NP_044273 130 aa MobC  _
169 in_silico TraJ_R751  NP_044275 124 aa MobC  _
170 in_silico TraK_R751  NP_044276 132 aa DUF5338  _
171 in_silico NikA_R721  NP_065330 113 aa MobC  _
172 in_silico MobB_pTF-FC2  B43256 106 aa RHH_1  _
173 in_silico MobC_pTF-FC2  AAA27390 118 aa RHH_1  _
174 experimental MbeB_ColE1  CAA33884 172 aa MbeB_N  _
175 experimental MbeC_ColE1  CAA33882 107 aa MobC  _
176 in_silico MobB_pTC-F14  NP_835375 103 aa RHH_1  _
177 in_silico MobC_pTC-F14  NP_835374 131 aa RHH_1  _
178 in_silico TraH_pIJB1  YP_006965895 108 aa RHH_1  _
179 in_silico TraJ_pIJB1  YP_006965896 129 aa RHH_1  _
180 in_silico TraK_pIJB1  YP_006965897 132 aa DUF5338  _
181 in_silico MobB_pSW100  AAC41487 139 aa MbeB_N  _
182 in_silico MobC_pSW100  AAC41486 107 aa MobC  _
183 experimental TraM_R1  P07294 127 aa Tra_M  _
184 experimental TraY_R1  CAA31972 75 aa TraY  _
185 in_silico TraH_pAKD33  AEV57344 130 aa TraY  _
186 in_silico TraJ_pAKD33  AEV57345 124 aa TraY  _
187 in_silico TraK_pAKD33  AEV57346 132 aa DUF5338  _
188 in_silico MobB_pIE1115  NP_065282 136 aa Mobilization_B  _
189 in_silico MobC_pIE1115  NP_065280 95 aa Mobilization_B  _
190 in_silico MobB_pIE1130  CAB75595 136 aa Mobilization_B  _
191 in_silico MobC_pIE1130  CAB75593 90 aa Mobilization_B  _
192 experimental TrwA_R7K  YP_001874875 121 aa Mobilization_B  _
193 in_silico TraH_pADP-1  NP_862459 130 aa Mobilization_B  _
194 in_silico TraJ_pADP-1  NP_862457 124 aa Mobilization_B  _
195 in_silico TraK_pADP-1  NP_862456 132 aa DUF5338  _
196 experimental Int_Tn916  AAB60030 405 aa Phage_integrase   Integrase_DNA   Phage_int_SAM_5  _
197 experimental Orf29_Tn1549  AAF72356 109 aa MobC  _
198 in_silico MocB_Tn4399  AAA98400 143 aa MobC  _
199 in_silico DapB_intD  AAW31843 271 aa Relaxase  _
200 in_silico DapC_intD  AAW31844 113 aa MobC  _

Microbial Bioinformatics Group in MML, SJTU