MGE detailed information
MGE type: Prophage MGE length: 58731 bp
Accession: NZ_CP019574 Location: 1523368..1582098 Organism: Staphylococcus aureus strain USA400-0051 Replicon: chromosome
Accession: NZ_CP019574 Location: 1523368..1582098 Organism: Staphylococcus aureus strain USA400-0051 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SAU400_RS07570 () | 1519117..1519365 | + | 249 | WP_001151997.1 | ferredoxin | - |
| SAU400_RS07575 () | 1519471..1520016 | - | 546 | WP_001186912.1 | ECF transporter S component | - |
| SAU400_RS07580 () | 1520426..1521340 | - | 915 | WP_000476340.1 | DUF1672 domain-containing protein | - |
| SAU400_RS07585 () | 1521397..1522314 | - | 918 | WP_000476881.1 | DUF1672 domain-containing protein | - |
| SAU400_RS07590 () | 1522372..1523277 | - | 906 | WP_000476866.1 | DUF1672 domain-containing protein | - |
| SAU400_RS07595 () | 1523368..1523553 | - | 186 | WP_000470336.1 | hypothetical protein | - |
| SAU400_RS07600 () | 1523807..1524784 | - | 978 | WP_057511301.1 | Leucotoxin LukDv | VF |
| SAU400_RS07605 () | 1524780..1525719 | - | 940 | Protein_1411 | Gamma-hemolysin component C | VF |
| SAU400_RS07610 () | 1526108..1527562 | - | 1455 | WP_000909207.1 | N-acetylmuramoyl-L-alanine amidase | - |
| SAU400_RS07615 () | 1527573..1527875 | - | 303 | WP_000339141.1 | phage holin | - |
| SAU400_RS07620 () | 1528011..1528310 | - | 300 | WP_000466784.1 | DUF2951 domain-containing protein | - |
| SAU400_RS07625 () | 1528356..1528520 | - | 165 | WP_000916020.1 | XkdX family protein | - |
| SAU400_RS07630 () | 1528513..1528902 | - | 390 | WP_001166599.1 | DUF2977 domain-containing protein | - |
| SAU400_RS07635 () | 1528902..1530368 | - | 1467 | WP_000067140.1 | BppU family phage baseplate upper protein | - |
| SAU400_RS07640 () | 1530368..1532278 | - | 1911 | WP_000429551.1 | minor structural protein | - |
| SAU400_RS07645 () | 1532294..1532584 | - | 291 | WP_000179858.1 | hypothetical protein | - |
| SAU400_RS07650 () | 1532584..1534167 | - | 1584 | WP_000384474.1 | prophage endopeptidase tail family protein | - |
| SAU400_RS07655 () | 1534176..1535000 | - | 825 | WP_001190533.1 | phage tail family protein | - |
| SAU400_RS07660 () | 1535000..1541201 | - | 6202 | Protein_1422 | phage tail tape measure protein | - |
| SAU400_RS07665 () | 1541215..1541373 | - | 159 | WP_000438833.1 | hypothetical protein | - |
| SAU400_RS07670 () | 1541424..1541765 | - | 342 | WP_000589166.1 | hypothetical protein | - |
| SAU400_RS07675 () | 1541823..1542278 | - | 456 | WP_000169128.1 | Ig domain-containing protein | - |
| SAU400_RS07680 () | 1542370..1543011 | - | 642 | WP_000807536.1 | tail protein | - |
| SAU400_RS07685 () | 1543046..1543441 | - | 396 | WP_001023806.1 | DUF3168 domain-containing protein | - |
| SAU400_RS07690 () | 1543442..1543843 | - | 402 | WP_000110023.1 | hypothetical protein | - |
| SAU400_RS07695 () | 1543840..1544172 | - | 333 | WP_000395498.1 | hypothetical protein | - |
| SAU400_RS07700 () | 1544184..1544462 | - | 279 | WP_000050973.1 | head-tail connector protein | - |
| SAU400_RS07705 () | 1544531..1545694 | - | 1164 | WP_001142734.1 | phage major capsid protein | - |
| SAU400_RS07710 () | 1545706..1546479 | - | 774 | WP_000061866.1 | Clp protease ClpP | - |
| SAU400_RS07715 () | 1546463..1547701 | - | 1239 | WP_001100665.1 | phage portal protein | - |
| SAU400_RS07720 () | 1547706..1549397 | - | 1692 | WP_000153544.1 | terminase large subunit | - |
| SAU400_RS07725 () | 1549387..1549692 | - | 306 | WP_000778933.1 | P27 family phage terminase small subunit | - |
| SAU400_RS07730 () | 1549818..1550132 | - | 315 | WP_000160692.1 | HNH endonuclease | - |
| SAU400_RS07735 () | 1550289..1550726 | - | 438 | WP_000528512.1 | transcriptional regulator | - |
| SAU400_RS07740 () | 1550739..1552106 | - | 1368 | WP_001793488.1 | DEAD/DEAH box helicase | - |
| SAU400_RS07745 () | 1552087..1552377 | - | 291 | WP_001548892.1 | VRR-NUC domain-containing protein | - |
| SAU400_RS07750 () | 1552511..1552609 | + | 99 | WP_001801650.1 | hypothetical protein | - |
| SAU400_RS07755 () | 1552718..1555165 | - | 2448 | WP_000884870.1 | virulence-associated E family protein | - |
| SAU400_RS07765 () | 1555453..1555653 | - | 201 | WP_000265252.1 | DUF1514 family protein | - |
| SAU400_RS07770 () | 1555721..1555873 | - | 153 | WP_000237867.1 | transcriptional activator RinB | - |
| SAU400_RS07775 () | 1555876..1556076 | - | 201 | WP_001125015.1 | hypothetical protein | - |
| SAU400_RS07780 () | 1556051..1556239 | - | 189 | WP_000195817.1 | DUF1381 domain-containing protein | - |
| SAU400_RS07785 () | 1556236..1556481 | - | 246 | WP_001282074.1 | hypothetical protein | - |
| SAU400_RS07790 () | 1556518..1557051 | - | 534 | WP_001061841.1 | dUTPase | - |
| SAU400_RS14835 () | 1557066..1557227 | - | 162 | WP_000889679.1 | hypothetical protein | - |
| SAU400_RS07795 () | 1557228..1557509 | - | 282 | WP_000454993.1 | hypothetical protein | - |
| SAU400_RS14840 () | 1557510..1557683 | - | 174 | WP_000028424.1 | hypothetical protein | Antitoxin Detail |
| SAU400_RS07800 () | 1557673..1557924 | - | 252 | WP_001826875.1 | DUF1024 family protein | Toxin Detail |
| SAU400_RS07805 () | 1557939..1558181 | - | 243 | WP_000132192.1 | hypothetical protein | - |
| SAU400_RS07810 () | 1558196..1558396 | - | 201 | WP_000235322.1 | hypothetical protein | - |
| SAU400_RS07815 () | 1558399..1558656 | - | 258 | WP_000022728.1 | DUF3310 domain-containing protein | - |
| SAU400_RS07820 () | 1558656..1559057 | - | 402 | WP_000113974.1 | PVL family protein | - |
| SAU400_RS07825 () | 1559057..1559242 | - | 186 | WP_001164629.1 | DUF3113 family protein | - |
| SAU400_RS07830 () | 1559255..1561208 | - | 1954 | Protein_1457 | DNA polymerase | - |
| SAU400_RS07835 () | 1561276..1561833 | - | 558 | WP_000645048.1 | DUF2815 family protein | - |
| SAU400_RS07840 () | 1561859..1563025 | - | 1167 | WP_000762552.1 | DUF2800 domain-containing protein | - |
| SAU400_RS07845 () | 1563022..1563384 | - | 363 | WP_000985979.1 | hypothetical protein | - |
| SAU400_RS07850 () | 1563399..1563722 | - | 324 | WP_000174994.1 | hypothetical protein | - |
| SAU400_RS07855 () | 1563801..1563962 | - | 162 | WP_001285963.1 | DUF1270 family protein | - |
| SAU400_RS07860 () | 1563975..1564238 | - | 264 | WP_001124190.1 | helix-turn-helix domain-containing protein | - |
| SAU400_RS07865 () | 1564263..1564478 | - | 216 | WP_001036302.1 | hypothetical protein | - |
| SAU400_RS07870 () | 1564533..1564898 | + | 366 | WP_001128433.1 | hypothetical protein | Antitoxin Detail |
| SAU400_RS07875 () | 1564867..1565112 | - | 246 | WP_001025401.1 | DUF2829 domain-containing protein | Toxin Detail |
| SAU400_RS07880 () | 1565128..1565376 | - | 249 | WP_000272860.1 | helix-turn-helix domain-containing protein | - |
| SAU400_RS07885 () | 1565540..1565863 | + | 324 | WP_001260485.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| SAU400_RS07890 () | 1565876..1566337 | + | 462 | WP_000525002.1 | hypothetical protein | Toxin Detail |
| SAU400_RS07895 () | 1566355..1566789 | + | 435 | WP_000755718.1 | hypothetical protein | - |
| SAU400_RS07900 () | 1566818..1567213 | + | 396 | WP_000449653.1 | hypothetical protein | - |
| SAU400_RS14845 () | 1567411..1567638 | - | 228 | WP_000471064.1 | hypothetical protein | - |
| SAU400_RS07910 () | 1568143..1569346 | + | 1204 | Protein_1473 | hypothetical protein ; Integrase | Integrase |
| SAU400_RS07915 () | 1569389..1571415 | - | 2027 | Protein_1474 | hypothetical protein | - |
| SAU400_RS07920 () | 1571444..1572334 | - | 891 | WP_087812915.1 | DUF1672 domain-containing protein | - |
| SAU400_RS07925 () | 1572579..1574330 | - | 1752 | WP_000987769.1 | two-component system sensor histidine kinase SrrB | - |
| SAU400_RS07930 () | 1574311..1575036 | - | 726 | WP_000064078.1 | Transcriptional regulatory protein SrrA | VF |
| SAU400_RS07935 () | 1575169..1575906 | - | 738 | WP_000159577.1 | rRNA pseudouridine synthase | - |
| SAU400_RS07940 () | 1575899..1576441 | - | 543 | WP_000368657.1 | SMC-Scp complex subunit ScpB | - |
| SAU400_RS07945 () | 1576434..1577166 | - | 733 | Protein_1480 | segregation/condensation protein A | - |
| SAU400_RS07950 () | 1577258..1577764 | + | 507 | WP_001183427.1 | DUF309 domain-containing protein | - |
| SAU400_RS07955 () | 1577842..1578729 | - | 888 | WP_000447733.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| SAU400_RS07960 () | 1578778..1579227 | - | 450 | WP_000392691.1 | transcriptional repressor | - |
| SAU400_RS07965 () | 1579332..1579874 | - | 543 | WP_000365246.1 | NUDIX hydrolase | - |
| SAU400_RS07970 () | 1579934..1580863 | + | 930 | WP_100292256.1 | aldo/keto reductase | - |
| SAU400_RS07975 () | 1581079..1581327 | - | 249 | WP_000995799.1 | hypothetical protein | - |
| SAU400_RS07980 () | 1581343..1582098 | - | 756 | WP_000678234.1 | SDR family oxidoreductase | - |
| SAU400_RS07985 () | 1582240..1583054 | + | 815 | Protein_1488 | pyrroline-5-carboxylate reductase | - |
| SAU400_RS07990 () | 1583157..1584077 | - | 921 | WP_000454068.1 | ribonuclease Z | - |
| SAU400_RS07995 () | 1584390..1585874 | + | 1485 | WP_000105070.1 | glucose-6-phosphate dehydrogenase | - |
| SAU400_RS08000 () | 1586104..1586970 | + | 867 | WP_000382586.1 | AraC family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Staphylococcus aureus subsp. aureus MW2 | Prophage | TA611, TA10107, TA10153, TA10156, TA20731 | NC_003923 | 1526005..1592556 | 0.003 |