MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 25105 bp
Accession: NC_014111 Location: 1..25105 Organism: Xylella fastidiosa Replicon: plasmid pXF-RIV11
Accession: NC_014111 Location: 1..25105 Organism: Xylella fastidiosa Replicon: plasmid pXF-RIV11
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HS687_RS00010 (pXFRIV11_p01) | 130..1230 | + | 1101 | WP_013087942.1 | zeta toxin family protein | - |
| HS687_RS00015 (pXFRIV11_p02) | 1289..1552 | + | 264 | WP_013087943.1 | antitoxin | Antitoxin Detail |
| HS687_RS00020 (pXFRIV11_p03) | 1549..1875 | + | 327 | WP_038230332.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| HS687_RS00025 (pXFRIV11_p04) | 1934..3070 | - | 1137 | WP_013087945.1 | hypothetical protein | Relaxase |
| HS687_RS00030 (pXFRIV11_p05) | 3136..4242 | - | 1107 | WP_013087946.1 | LPD7 domain-containing protein | - |
| HS687_RS00035 (pXFRIV11_p06) | 4255..6531 | - | 2277 | WP_013087947.1 | hypothetical protein | VF |
| HS687_RS00040 (pXFRIV11_p07) | 6528..7571 | - | 1044 | WP_013087948.1 | Type IV secretion system protein VirB11 | VF |
| HS687_RS00045 (pXFRIV11_p08) | 7549..8847 | - | 1299 | WP_013087949.1 | hypothetical protein | VF |
| HS687_RS00050 (pXFRIV11_p09) | 8850..9629 | - | 780 | WP_013087950.1 | Type IV secretion system protein virB9 | VF |
| HS687_RS00055 (pXFRIV11_p10) | 9626..10336 | - | 711 | WP_013087951.1 | Type IV secretion system protein PtlE | VF |
| HS687_RS00060 (pXFRIV11_p11) | 10340..11311 | - | 972 | WP_013087952.1 | type IV secretion system protein | - |
| HS687_RS00065 (pXFRIV11_p16) | 12679..13344 | - | 666 | WP_013087957.1 | Type IV secretion system protein virB5 | VF |
| HS687_RS00070 (pXFRIV11_p17) | 13347..15761 | - | 2415 | WP_038230323.1 | Type IV secretion system protein virB4 | VF |
| HS687_RS00075 (pXFRIV11_p18) | 15724..16107 | - | 384 | WP_013087959.1 | VirB3 family type IV secretion system protein | - |
| HS687_RS00080 (pXFRIV11_p19) | 16112..16432 | - | 321 | WP_013087960.1 | TrbC/VirB2 family protein | - |
| HS687_RS00085 (pXFRIV11_p20) | 16435..16914 | - | 480 | WP_080679721.1 | hypothetical protein | - |
| HS687_RS00090 | 16917..17117 | - | 201 | WP_024748608.1 | hypothetical protein | - |
| HS687_RS00095 | 17169..17417 | - | 249 | WP_038230319.1 | hypothetical protein | - |
| HS687_RS00100 | 17691..17834 | + | 144 | WP_254224883.1 | hypothetical protein | - |
| HS687_RS00105 | 17922..18281 | + | 360 | WP_038211603.1 | hypothetical protein | - |
| HS687_RS00110 (pXFRIV11_p23) | 18375..19046 | - | 672 | WP_013087963.1 | restriction endonuclease | - |
| HS687_RS00115 | 19071..19199 | + | 129 | WP_234056444.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| HS687_RS00120 | 19251..19520 | - | 270 | WP_014607314.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HS687_RS00125 (pXFRIV11_p24) | 19504..19734 | - | 231 | WP_038211605.1 | DUF6290 family protein | Antitoxin Detail |
| HS687_RS00130 (pXFRIV11_p25) | 19911..20513 | + | 603 | WP_013087965.1 | Tn3 family transposase TnBth3 | Transposase |
| HS687_RS00135 (pXFRIV11_p26) | 20540..21376 | + | 837 | WP_013087966.1 | plasmid replication initiator TrfA | - |
| HS687_RS00140 (pXFRIV11_p28) | 21820..22056 | + | 237 | WP_013087968.1 | antitoxin MazE family protein | - |
| HS687_RS00145 (pXFRIV11_p29) | 22053..22380 | + | 328 | Protein_28 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| HS687_RS00150 (pXFRIV11_p30) | 22485..22928 | - | 444 | WP_014607318.1 | hypothetical protein | - |
| HS687_RS00155 (pXFRIV11_p31) | 22929..23681 | - | 753 | WP_013087971.1 | hypothetical protein | - |
| HS687_RS00160 (pXFRIV11_p32) | 23694..24050 | - | 357 | WP_013087972.1 | hypothetical protein | - |
| HS687_RS00165 (pXFRIV11_p33) | 24327..24956 | + | 630 | WP_234056441.1 | hypothetical protein | Relaxase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Xylella fastidiosa MUL0034 | Non-Mobilizable plasmid | TA45494 | NZ_CP006739 | 1..24391 | 0.001 | |
| Xylella fastidiosa subsp. morus strain Riv16 | Non-Mobilizable plasmid | TA230436, TA230437 | NZ_CP090317 | 1..25102 | 0 | |
| Xylella fastidiosa subsp. morus strain Riv25 | Non-Mobilizable plasmid | TA230921, TA230922 | NZ_CP090505 | 1..24372 | 0.001 | |
| Xylella fastidiosa subsp. morus strain Riv19 | Non-Mobilizable plasmid | TA230937, TA230938 | NZ_CP090507 | 1..24372 | 0.001 | |
| Xylella fastidiosa subsp. morus strain Riv11 | Non-Mobilizable plasmid | TA230953, TA230954 | NZ_CP090509 | 1..25105 | 0 |