Detailed information of regulator


Summary

Regulator ID REG0372 experimental
Regulator type protein
Regulatory pathway (from literatures) Transcription regulator
KEGG pathway (determined by BlastKOALA) -
Related T6SS -
Strain Burkholderia multivorans ATCC 17616
Replicon chromosome
Sequence Protein sequence (99 a.a.); Nucleotide sequence (297 bp)
Description Type VI secretion system might also be affected in the nonmucoid variant since seven genes implicated in this system showed decreased expression.
Reference
External database links

Locus tag (Gene) BMUL_RS00795 (hns)
Coordinates (Strand) 179094..179390 (+)
NCBI ID WP_006401402.1
RefSeq NC_010084
Uniprot ID A0A0H3KSB4_BURM1, B9BC87_9BURK, B9C0D7_9BURK, A0A1B4MQC4_9BURK, J5B918_9BURK
KEGG ID bmj:BMULJ_03106, bmk:DM80_1529
KEGG pathway (determined by BlastKOALA) -
PDB ID -
  Target
Target Regulation (↓/↑) Target sequence
T6SS ↑ -
Pfam domain hit(s) of regulator

Domain Pfam ID E-value Aligned region
Histone_HNS PF00816.23 5e-27 6..88
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-98 MSQYAKLKAQIAELQAQADEVRRQEVEAVIADIRRLIDEYGLTAQDLGFAERARRGRPPKKAPLPPKYRDPKTGATWSGRGKPPNWIVGKNRDRFLME


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9901 - -


  Protein sequence of regulator: 99 a.a.    .

>REG0372 NC_010084:179094-179390 [Burkholderia multivorans ATCC 17616]
MSQYAKLKAQIAELQAQADEVRRQEVEAVIADIRRLIDEYGLTAQDLGFAERARRGRPPKKAPLPPKYRDPKTGATWSGR
GKPPNWIVGKNRDRFLME*

  Nucleotide sequence of regulator: 297 bp    .

>REG0372 NC_010084:179094-179390 [Burkholderia multivorans ATCC 17616]
ATGTCTCAATACGCAAAACTCAAGGCCCAGATTGCCGAATTGCAGGCCCAGGCGGACGAGGTGCGGCGTCAGGAAGTCGA
GGCCGTGATCGCCGATATCCGGCGTCTGATCGACGAATACGGGCTGACCGCTCAGGATCTCGGCTTTGCCGAGCGCGCGC
GCCGCGGCCGTCCGCCGAAAAAGGCGCCGCTGCCGCCGAAATACCGCGATCCGAAGACGGGTGCGACGTGGAGCGGCCGC
GGCAAGCCGCCGAATTGGATCGTCGGCAAAAACCGCGACCGTTTCCTGATGGAATGA