Detailed information of Recipient susceptibility factor


Summary

ID RSF000055 experimental
Strain Acinetobacter baumannii strain ATCC 17978
Replicon chromosome
Sequence Protein sequence (431 a.a.); Nucleotide sequence (1293 bp)
Response to T6SS attack protective
Known or putative function PG editing
Description PG editing with d-Lys provides A. baumannii immunity against T6SS-dependent attacks from diverse bacteria
Reference
experimental Experimental investigation has been performed.
External database links

Locus tag (Gene) ACX60_RS11355 (racK)
Coordinates (Strand) 2382673..2383965 (+)
NCBI ID WP_000769882.1
RefSeq NZ_CP012004
Uniprot ID A0A1E3M5A9_ACIBA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Ala_racemase_N PF01168.22 7.1e-45 51..273
Ala_racemase_C PF00842.23 4.8e-35 283..408
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-430 MKLKTNFSHLAYSCALVLFGSMQFAHAAPLLTSHITNEVSPAPTANAWIEVDTQAFEDNIKRTNQLLNGKTQLCVVMKANAYGHSIDLLMPSVMKLNVSCIGITSNAEAAMVRKHGYKGKITRLRTATDSEIINAHALNIEELLGNYDQATRISKWAEANNTTVHYSLALNSGGMDRNGLEMSTAQGKEQAVAITKLPNLKIDGIMTHYAVEDEKYVRERLAQFNEQTAWLIKKAKLNRKELTLHTANSFATVNVPESHLDMVRAGAIIYGDFPNHPEYKRMMAFKTQIAAVNNYLKGSTVGYDQTYTLTRDSKLANLPVGYSDGYRRSFSNKAFVLVNGQKAPVVGRVSMNTVMVDVTDIPEAKAGDEVVLFGRQGNAEVQSSDLTSLTGHILTEAYTPWSNSNPQVIKPIQSPQQVILTNSKVAATAE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
SP(Sec/SPI) 0.9955 pos: 27-28. AHA-AP. MKLKTNFSHLAYSCALVLFGSMQFAHA


  Protein sequence: 431 a.a.    .

>RSF000055 NZ_CP012004:2382673-2383965 [Acinetobacter baumannii]
MKLKTNFSHLAYSCALVLFGSMQFAHAAPLLTSHITNEVSPAPTANAWIEVDTQAFEDNIKRTNQLLNGKTQLCVVMKAN
AYGHSIDLLMPSVMKLNVSCIGITSNAEAAMVRKHGYKGKITRLRTATDSEIINAHALNIEELLGNYDQATRISKWAEAN
NTTVHYSLALNSGGMDRNGLEMSTAQGKEQAVAITKLPNLKIDGIMTHYAVEDEKYVRERLAQFNEQTAWLIKKAKLNRK
ELTLHTANSFATVNVPESHLDMVRAGAIIYGDFPNHPEYKRMMAFKTQIAAVNNYLKGSTVGYDQTYTLTRDSKLANLPV
GYSDGYRRSFSNKAFVLVNGQKAPVVGRVSMNTVMVDVTDIPEAKAGDEVVLFGRQGNAEVQSSDLTSLTGHILTEAYTP
WSNSNPQVIKPIQSPQQVILTNSKVAATAE*

  Nucleotide sequence: 1293 bp    .

>RSF000055 NZ_CP012004:2382673-2383965 [Acinetobacter baumannii]
ATGAAACTTAAAACAAATTTTTCGCATCTCGCTTATAGTTGTGCATTGGTATTATTCGGTTCCATGCAATTTGCCCATGC
TGCACCTTTACTCACGTCTCATATCACAAATGAAGTCAGCCCTGCACCTACAGCAAATGCATGGATTGAAGTTGATACTC
AAGCTTTTGAAGATAATATTAAAAGGACAAATCAATTACTTAATGGCAAAACACAACTTTGTGTAGTCATGAAAGCAAAT
GCATATGGGCATAGTATTGACCTACTTATGCCGAGTGTTATGAAGTTAAACGTATCGTGTATTGGCATCACCAGTAATGC
AGAAGCGGCGATGGTGCGTAAGCATGGCTATAAAGGTAAAATTACACGTTTACGTACAGCCACAGATAGTGAAATCATCA
ATGCACATGCGTTAAATATCGAAGAGCTTTTGGGTAATTATGATCAGGCTACCCGTATCTCTAAATGGGCAGAAGCGAAC
AATACAACTGTTCATTATAGCTTGGCTTTAAATTCGGGTGGTATGGATCGTAATGGTCTTGAAATGTCTACAGCTCAAGG
TAAAGAACAAGCTGTTGCAATCACTAAGCTTCCAAATCTTAAAATTGATGGCATTATGACCCATTATGCTGTAGAAGATG
AAAAATATGTTCGTGAGCGCCTAGCTCAATTTAATGAACAAACAGCATGGTTGATTAAAAAAGCCAAACTAAATCGTAAA
GAATTAACATTACATACAGCAAATTCATTTGCTACCGTAAATGTTCCTGAATCACATTTAGATATGGTCCGTGCAGGCGC
AATTATTTATGGAGATTTTCCTAATCACCCAGAATATAAACGCATGATGGCATTTAAAACACAAATTGCTGCAGTTAATA
ATTACCTTAAAGGTTCAACTGTAGGTTATGACCAAACTTATACGTTGACACGTGACTCCAAACTTGCAAACCTGCCTGTC
GGTTATTCGGATGGCTACCGTCGTAGTTTTAGTAATAAAGCTTTTGTCTTAGTCAATGGACAAAAAGCGCCAGTGGTTGG
TCGAGTATCAATGAATACTGTTATGGTTGATGTAACAGATATTCCAGAAGCCAAAGCGGGTGATGAAGTTGTATTATTTG
GACGTCAAGGCAATGCTGAGGTTCAATCTAGTGATTTAACGAGTCTTACAGGCCATATTTTGACAGAGGCCTATACTCCA
TGGAGTAACTCTAATCCACAAGTGATTAAACCTATTCAATCTCCACAACAAGTGATATTAACCAATAGTAAAGTTGCAGC
AACCGCTGAGTAA