Detailed information of immunity protein
Summary
| Immunity protein ID | IMU00371  |
| Cognate effector | - |
| Related T6SS (Type) | - |
| Strain | Bacteroides xylanisolvens strain H207 |
| Replicon | chromosome |
| Sequence | Protein sequence (330 a.a.); Nucleotide sequence (990 bp) |
| Description | The cumulative protection afforded by orphan i6 and i7 genes underlies the ability of B. fragilis 638R to persist during T6S-mediated antagonism in vivo |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | FKZ68_RS23640 (i6) |
| Coordinates (Strand) | 5819026..5820015 (-) |
| NCBI ID | 1486651078 |
| RefSeq | NZ_CP041230 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-329 | MGRIILFFLGSALFLSGCKNSKQPEGYNSVNIIEYVNVYDENNRILTAQGTEYDYLYFGDNKDKEILADVNNFTTIYSYDNDSSCYTVKEPLSESLLKTMRYTENTIEELVLENNKDTFSYSFSLYHDKNKPKYKKDIIILGDEPFSDSRYEEYYYYDNNGNNTKKIYHDLNTGEREETYKFNDTDYKEAVNLVPSSDYKQNIECSLKQTVNDTLITRITLNGVINRVMKEYIDGKKKIKEEFDNDMTLINKETEYEERGLKVNVNHTLRSTGYSTDSIYYEGNKKVKHIYNSDYNGTITVEISEYDEQGNIIKKTIKLRWASDNKITS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| LIPO(Sec/SPII) | 0.9994 | pos: 17-18. LSG-CK. | MGRIILFFLGSALFLSG |
Protein sequence: 330 a.a. .
>IMU00371 NZ_CP041230:c5820015-5819026 [Bacteroides xylanisolvens]
MGRIILFFLGSALFLSGCKNSKQPEGYNSVNIIEYVNVYDENNRILTAQGTEYDYLYFGDNKDKEILADVNNFTTIYSYD
NDSSCYTVKEPLSESLLKTMRYTENTIEELVLENNKDTFSYSFSLYHDKNKPKYKKDIIILGDEPFSDSRYEEYYYYDNN
GNNTKKIYHDLNTGEREETYKFNDTDYKEAVNLVPSSDYKQNIECSLKQTVNDTLITRITLNGVINRVMKEYIDGKKKIK
EEFDNDMTLINKETEYEERGLKVNVNHTLRSTGYSTDSIYYEGNKKVKHIYNSDYNGTITVEISEYDEQGNIIKKTIKLR
WASDNKITS*
MGRIILFFLGSALFLSGCKNSKQPEGYNSVNIIEYVNVYDENNRILTAQGTEYDYLYFGDNKDKEILADVNNFTTIYSYD
NDSSCYTVKEPLSESLLKTMRYTENTIEELVLENNKDTFSYSFSLYHDKNKPKYKKDIIILGDEPFSDSRYEEYYYYDNN
GNNTKKIYHDLNTGEREETYKFNDTDYKEAVNLVPSSDYKQNIECSLKQTVNDTLITRITLNGVINRVMKEYIDGKKKIK
EEFDNDMTLINKETEYEERGLKVNVNHTLRSTGYSTDSIYYEGNKKVKHIYNSDYNGTITVEISEYDEQGNIIKKTIKLR
WASDNKITS*
Nucleotide sequence: 990 bp .
>IMU00371 NZ_CP041230:c5820015-5819026 [Bacteroides xylanisolvens]
ATGGGTAGAATCATTTTATTTTTTTTAGGAAGTGCATTGTTTTTGTCCGGCTGCAAGAATAGTAAACAGCCGGAAGGTTA
TAATTCTGTTAATATTATTGAATATGTTAATGTTTATGATGAAAACAACAGGATTCTAACCGCACAGGGTACTGAATATG
ACTATCTCTATTTTGGAGACAATAAAGATAAAGAGATCTTGGCTGATGTAAATAATTTTACAACGATATATAGTTATGAT
AATGATTCTTCCTGCTATACTGTAAAGGAACCCTTGTCGGAATCATTGCTAAAAACAATGAGATACACTGAAAATACCAT
AGAAGAACTTGTATTGGAAAATAATAAGGACACATTTAGTTATTCTTTTTCTCTCTATCATGATAAGAATAAACCTAAGT
ATAAAAAAGATATTATAATATTAGGAGATGAACCCTTTTCTGACTCAAGATATGAGGAATACTACTACTATGATAATAAT
GGAAATAATACGAAAAAAATCTATCATGACTTGAACACCGGGGAAAGAGAAGAAACCTATAAATTTAATGATACAGATTA
TAAGGAAGCTGTTAATCTTGTCCCTTCTTCCGATTACAAACAAAACATCGAGTGTTCATTGAAACAAACTGTTAATGATA
CCTTAATCACTCGGATTACCTTAAACGGTGTAATTAATAGAGTGATGAAGGAATACATTGATGGAAAAAAGAAAATTAAG
GAAGAGTTTGACAATGACATGACTTTAATCAATAAAGAAACAGAGTATGAAGAAAGAGGACTGAAGGTAAATGTTAATCA
TACTTTAAGAAGTACAGGTTACTCAACCGACAGTATCTATTATGAAGGAAACAAAAAAGTTAAGCATATTTATAATTCTG
ACTACAATGGCACCATAACAGTTGAAATTTCAGAATATGATGAGCAAGGAAATATAATAAAGAAAACAATAAAACTCCGA
TGGGCGTCAGATAATAAAATTACTAGTTGA
ATGGGTAGAATCATTTTATTTTTTTTAGGAAGTGCATTGTTTTTGTCCGGCTGCAAGAATAGTAAACAGCCGGAAGGTTA
TAATTCTGTTAATATTATTGAATATGTTAATGTTTATGATGAAAACAACAGGATTCTAACCGCACAGGGTACTGAATATG
ACTATCTCTATTTTGGAGACAATAAAGATAAAGAGATCTTGGCTGATGTAAATAATTTTACAACGATATATAGTTATGAT
AATGATTCTTCCTGCTATACTGTAAAGGAACCCTTGTCGGAATCATTGCTAAAAACAATGAGATACACTGAAAATACCAT
AGAAGAACTTGTATTGGAAAATAATAAGGACACATTTAGTTATTCTTTTTCTCTCTATCATGATAAGAATAAACCTAAGT
ATAAAAAAGATATTATAATATTAGGAGATGAACCCTTTTCTGACTCAAGATATGAGGAATACTACTACTATGATAATAAT
GGAAATAATACGAAAAAAATCTATCATGACTTGAACACCGGGGAAAGAGAAGAAACCTATAAATTTAATGATACAGATTA
TAAGGAAGCTGTTAATCTTGTCCCTTCTTCCGATTACAAACAAAACATCGAGTGTTCATTGAAACAAACTGTTAATGATA
CCTTAATCACTCGGATTACCTTAAACGGTGTAATTAATAGAGTGATGAAGGAATACATTGATGGAAAAAAGAAAATTAAG
GAAGAGTTTGACAATGACATGACTTTAATCAATAAAGAAACAGAGTATGAAGAAAGAGGACTGAAGGTAAATGTTAATCA
TACTTTAAGAAGTACAGGTTACTCAACCGACAGTATCTATTATGAAGGAAACAAAAAAGTTAAGCATATTTATAATTCTG
ACTACAATGGCACCATAACAGTTGAAATTTCAGAATATGATGAGCAAGGAAATATAATAAAGAAAACAATAAAACTCCGA
TGGGCGTCAGATAATAAAATTACTAGTTGA