Detailed information of immunity protein


Summary

Immunity protein ID IMU00370 experimental
Cognate effector -
Related T6SS (Type) -
Strain Bacteroides ovatus strain 3725 D1 iv
Replicon chromosome
Sequence Protein sequence (301 a.a.); Nucleotide sequence (903 bp)
Description The cumulative protection afforded by orphan i6 and i7 genes underlies the ability of B. fragilis 638R to persist during T6S-mediated antagonism in vivo
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) DYI28_RS04720 (i7b)
Coordinates (Strand) 1007788..1008690 (-)
NCBI ID 696266386
RefSeq NZ_CP041395
Uniprot ID A0A1F0I9G1_9BACE
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-34 MKSHKEYKNEYQHWLDEIQALNKAVQHDAKKWKI
Transmembrane helix 35-57 VGCFFALCASLSFCGSFFAAYFI
Outside 58-66 CEIATITNL
Transmembrane helix 67-86 TLSVGVTILGFCFWLVFIFY
Inside 87-141 KVASKVFPKIPLINNDELGHYGCFDFRDEWVYKYIDVFKQFDEKRIVIDASNHDK
Transmembrane helix 142-164 VGVFLTCLLAFVLLALLEMFPFR
Outside 165-173 DGNNNFVDN
Transmembrane helix 174-193 FLIVYAYTIVLILGIPMLLS
Inside 194-300 PRRTIVFDREKKTITIPRRWLIHKEETIPFQKAVISFGQDALRGIDGVVIANYQHLVGEVSLQFAGRTNGYCFARLIQAYMTEEDLSNYPEFETFRQIQEEININRL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9610 - -


  Protein sequence: 301 a.a.    .

>IMU00370 NZ_CP041395:c1008690-1007788 [Bacteroides ovatus]
MKSHKEYKNEYQHWLDEIQALNKAVQHDAKKWKIVGCFFALCASLSFCGSFFAAYFICEIATITNLTLSVGVTILGFCFW
LVFIFYKVASKVFPKIPLINNDELGHYGCFDFRDEWVYKYIDVFKQFDEKRIVIDASNHDKVGVFLTCLLAFVLLALLEM
FPFRDGNNNFVDNFLIVYAYTIVLILGIPMLLSPRRTIVFDREKKTITIPRRWLIHKEETIPFQKAVISFGQDALRGIDG
VVIANYQHLVGEVSLQFAGRTNGYCFARLIQAYMTEEDLSNYPEFETFRQIQEEININRL*

  Nucleotide sequence: 903 bp    .

>IMU00370 NZ_CP041395:c1008690-1007788 [Bacteroides ovatus]
ATGAAAAGCCATAAAGAATATAAAAATGAATATCAACACTGGCTTGATGAAATTCAGGCATTAAATAAAGCAGTGCAACA
TGATGCGAAAAAATGGAAAATTGTAGGCTGTTTTTTCGCTCTGTGTGCGAGTCTATCATTCTGTGGTTCATTTTTTGCGG
CTTACTTTATCTGTGAGATAGCAACAATAACCAACTTGACTTTATCTGTAGGTGTTACAATATTAGGATTTTGCTTTTGG
TTAGTATTTATATTTTACAAAGTGGCTTCTAAAGTTTTCCCAAAAATTCCTCTTATTAACAATGACGAACTTGGACATTA
TGGTTGTTTTGATTTCCGAGATGAATGGGTGTATAAATATATTGATGTATTTAAACAATTCGATGAGAAAAGAATAGTGA
TTGATGCAAGTAATCATGATAAAGTTGGAGTGTTTTTGACTTGTCTTTTGGCTTTTGTTTTACTTGCTCTATTGGAAATG
TTTCCCTTTAGAGACGGAAATAATAATTTCGTAGATAATTTTCTAATTGTTTACGCTTATACGATTGTATTGATATTGGG
AATACCGATGCTTTTATCCCCCCGAAGGACAATTGTCTTTGACCGGGAAAAGAAAACAATCACTATTCCTCGCCGATGGC
TAATCCATAAAGAAGAAACGATACCATTTCAAAAAGCGGTGATTTCCTTTGGGCAGGATGCTCTCCGAGGAATTGATGGC
GTAGTCATAGCCAATTACCAGCATCTTGTTGGTGAAGTTTCTTTGCAGTTTGCCGGTCGTACAAACGGGTATTGTTTTGC
CCGTTTGATTCAAGCTTATATGACTGAAGAAGATTTATCAAACTATCCCGAATTTGAAACTTTCAGGCAAATACAGGAAG
AAATCAATATAAACAGACTATGA