Detailed information of immunity protein


Summary

Immunity protein ID IMU00364 experimental
Cognate effector -
Related T6SS (Type) T6SS01296 experimental (Type iii)
Strain Bacteroides dorei DSM 17855
Replicon chromosome
Sequence Protein sequence (352 a.a.); Nucleotide sequence (1056 bp)
Description Recovery of Bacteroides dorei DSM 17855 cells lacking GA2_e14-i14 (BACDOR_RS22955-17020) from two-strain in vitro growth competition experiments with the indicated donor strains shows GA2_e14-i14 is T6SS effector and immunity cognate protein.
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) BACDOR_RS17020 (i14)
Coordinates (Strand) 5052..6107 (-)
NCBI ID 696360594
RefSeq NZ_DS995532
Uniprot ID UPI00051857CE
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Imm5 PF14423.8 9.4e-24 3..171
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-351 MLLKEEIRNNSFGHLPLKYRVHLMRYIGSPLIVNKIFYNCAVKIKSLNEEIFCKNEILLQILFEIQKYLYGNKGDKNHFMVIFDKYKNYLYEYDAFGGLLLSLCFNIATDASLILNIAEYNEEDDNEYDFEVWNPDFFAEIIWSEGIYFAAPNSGSVRKREAYWFWVLDTIKKIYRDTDLEIIPLSYQNRIDKKITIPFRNQFDDTIEAQFKDVLLYIMNCEPQKLKEGLGYKILFVSCIVDMFNITSSKGDTITLNTKNVDKICNAFRNIRKLMYKNNSKQGAWFQVEISLKNRDIYTSKFNYDDFDQIPSLFHNPDWLLKMFKEYPRSKEYTPEWLRKIIGNKCKYLKK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9958 - -


  Protein sequence: 352 a.a.    .

>IMU00364 NZ_DS995532:c6107-5052 [Bacteroides dorei DSM 17855]
MLLKEEIRNNSFGHLPLKYRVHLMRYIGSPLIVNKIFYNCAVKIKSLNEEIFCKNEILLQILFEIQKYLYGNKGDKNHFM
VIFDKYKNYLYEYDAFGGLLLSLCFNIATDASLILNIAEYNEEDDNEYDFEVWNPDFFAEIIWSEGIYFAAPNSGSVRKR
EAYWFWVLDTIKKIYRDTDLEIIPLSYQNRIDKKITIPFRNQFDDTIEAQFKDVLLYIMNCEPQKLKEGLGYKILFVSCI
VDMFNITSSKGDTITLNTKNVDKICNAFRNIRKLMYKNNSKQGAWFQVEISLKNRDIYTSKFNYDDFDQIPSLFHNPDWL
LKMFKEYPRSKEYTPEWLRKIIGNKCKYLKK*

  Nucleotide sequence: 1056 bp    .

>IMU00364 NZ_DS995532:c6107-5052 [Bacteroides dorei DSM 17855]
ATGTTGTTGAAAGAGGAAATAAGGAATAACTCTTTTGGACATTTACCATTGAAATATCGTGTTCATCTTATGCGTTATAT
AGGTAGTCCATTAATTGTCAACAAAATATTTTATAATTGTGCAGTTAAAATAAAGAGCCTAAATGAGGAAATATTTTGTA
AGAATGAAATATTGCTTCAGATATTATTTGAAATACAAAAATATTTATATGGCAATAAAGGTGATAAAAATCATTTTATG
GTAATTTTTGATAAATATAAAAATTATCTATATGAATATGATGCTTTTGGAGGATTATTATTGTCACTATGTTTTAATAT
TGCTACTGATGCATCCTTGATATTGAATATAGCGGAATATAATGAAGAAGATGATAATGAATATGATTTTGAAGTGTGGA
ATCCTGATTTTTTTGCGGAAATAATTTGGTCTGAAGGTATCTACTTTGCTGCTCCAAATAGTGGTAGTGTAAGAAAAAGA
GAAGCATATTGGTTTTGGGTATTGGATACCATAAAAAAGATCTACAGAGATACTGATTTGGAGATTATTCCTTTATCTTA
TCAAAATAGAATAGATAAAAAAATTACTATCCCTTTTCGTAATCAATTTGATGATACTATTGAGGCTCAATTCAAAGATG
TACTACTTTATATAATGAATTGTGAACCTCAAAAGCTAAAGGAAGGACTTGGATATAAGATATTATTTGTCTCATGTATA
GTTGATATGTTTAATATCACTTCATCTAAAGGGGATACAATAACATTAAATACAAAAAATGTAGATAAAATCTGTAATGC
ATTTAGAAATATACGTAAACTAATGTATAAGAACAATTCAAAACAAGGTGCATGGTTTCAAGTTGAAATATCGTTAAAAA
ATAGAGACATATATACATCCAAGTTTAATTATGATGACTTTGATCAAATTCCATCTTTATTTCATAATCCTGATTGGTTG
TTGAAAATGTTTAAAGAGTATCCACGAAGTAAAGAATATACACCAGAATGGTTAAGAAAAATCATAGGTAATAAATGTAA
ATATTTAAAAAAATAA