Detailed information of effector
Summary
| Effector ID | EFF00059  |
| Effector type | - |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00042 (Type i1) |
| Strain | Pseudomonas syringae pv. tomato str. DC3000 |
| Replicon | chromosome |
| Sequence | Protein sequence (173 a.a.); Nucleotide sequence (519 bp) |
| Description | - |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | PSPTO_RS28130 |
| Coordinates (Strand) | 6181106..6181624 (+) |
| NCBI ID | 28872543 |
| RefSeq | NC_004578 |
| Uniprot ID | Q87U73_PSESM |
| KEGG ID | pst:PSPTO_5435 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 1.8e-38 | 6..155 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-172 | MATPAYMSITGTKQGLITAGAFTADSVGNTYQEGHEDQVMVQGFSHELIIPRDPQSGQPTGQRVHKPVKITKVFDKSSPLLLAALTSGERLTEITIQWYRTSAAGTQEHYYTTKLEDAIIVDIKDYMHNCQDPANAHFTHLEDVEFTYRKITWTHEVSGTSGSDDWRSPVAG |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.7877 | - | - |
Protein sequence: 173 a.a. .
>EFF00059 NC_004578:6181106-6181624 (Unknown) [Pseudomonas syringae pv. tomato str. DC3000]
MATPAYMSITGTKQGLITAGAFTADSVGNTYQEGHEDQVMVQGFSHELIIPRDPQSGQPTGQRVHKPVKITKVFDKSSPL
LLAALTSGERLTEITIQWYRTSAAGTQEHYYTTKLEDAIIVDIKDYMHNCQDPANAHFTHLEDVEFTYRKITWTHEVSGT
SGSDDWRSPVAG*
MATPAYMSITGTKQGLITAGAFTADSVGNTYQEGHEDQVMVQGFSHELIIPRDPQSGQPTGQRVHKPVKITKVFDKSSPL
LLAALTSGERLTEITIQWYRTSAAGTQEHYYTTKLEDAIIVDIKDYMHNCQDPANAHFTHLEDVEFTYRKITWTHEVSGT
SGSDDWRSPVAG*
Nucleotide sequence: 519 bp .
>EFF00059 NC_004578:6181106-6181624 (Unknown) [Pseudomonas syringae pv. tomato str. DC3000]
ATGGCTACGCCAGCGTACATGTCCATCACCGGCACCAAACAAGGCCTGATCACCGCCGGTGCCTTCACTGCTGACTCGGT
CGGCAACACCTACCAGGAAGGTCACGAAGACCAAGTGATGGTTCAGGGCTTCAGCCACGAACTCATCATCCCGCGTGACC
CGCAGTCGGGCCAACCTACCGGTCAGCGCGTCCACAAGCCGGTCAAGATCACCAAAGTGTTCGACAAGTCCTCGCCTCTG
CTGCTGGCAGCACTGACCTCTGGCGAGCGTCTGACCGAAATCACCATCCAGTGGTACCGCACCTCGGCTGCCGGCACTCA
AGAGCACTACTACACCACCAAGCTTGAAGACGCGATCATCGTTGACATCAAGGACTACATGCACAATTGCCAAGACCCGG
CGAACGCGCATTTCACCCATTTGGAAGACGTAGAATTCACCTACCGCAAAATCACTTGGACCCACGAAGTATCCGGTACT
TCGGGTTCCGATGACTGGCGTTCCCCGGTCGCTGGCTAA
ATGGCTACGCCAGCGTACATGTCCATCACCGGCACCAAACAAGGCCTGATCACCGCCGGTGCCTTCACTGCTGACTCGGT
CGGCAACACCTACCAGGAAGGTCACGAAGACCAAGTGATGGTTCAGGGCTTCAGCCACGAACTCATCATCCCGCGTGACC
CGCAGTCGGGCCAACCTACCGGTCAGCGCGTCCACAAGCCGGTCAAGATCACCAAAGTGTTCGACAAGTCCTCGCCTCTG
CTGCTGGCAGCACTGACCTCTGGCGAGCGTCTGACCGAAATCACCATCCAGTGGTACCGCACCTCGGCTGCCGGCACTCA
AGAGCACTACTACACCACCAAGCTTGAAGACGCGATCATCGTTGACATCAAGGACTACATGCACAATTGCCAAGACCCGG
CGAACGCGCATTTCACCCATTTGGAAGACGTAGAATTCACCTACCGCAAAATCACTTGGACCCACGAAGTATCCGGTACT
TCGGGTTCCGATGACTGGCGTTCCCCGGTCGCTGGCTAA