Detailed information of component protein


Summary

Component ID T6CP016179
Component protein type TssC
T6SS ID (Type) T6SS01296 experimental (Type iii)
Strain Bacteroides dorei DSM 17855
Replicon chromosome
Sequence Protein sequence (459 a.a.); Nucleotide sequence (1377 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BACDOR_RS16915
Coordinate (Strand) 27503..28879 (+)
NCBI ID 490416217
RefSeq NZ_DS995532
Uniprot ID UPI000184174D
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
TssC PF17541.4 2.8e-229 29..456
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-458 MIVMSEQNTQREAAVQQQQAVAQSRNLNAELQILAKFGGFNVLESSVDGIQNMNPERKARRNIFLSDPERAAERKELEKRLEMWVDMLKGNKSISEMVELCQKKSAAVSGLLSQNQLKAVEEVRQLEKSYRTVMLFYKNTDSDKIKNISIVNASMSQLTDLDNSFFIDAIANELRANYDRLDLRTNYSLLVIPGYLGSNKVVEKWAKIAHDNKVMIYTDFADLEKPDDVIEMFFDSNLSGGDVYKSNVCMTCNYLVGRGRYAELGETEDLLIPPSAALAGSVYKTVMAQVTAGKKYGSMSEVDGVAFNLKKSEISEIEKIGLIPMVKEYGKVMAFSAKTLFNGDNLGLQTYSVVRVFDWVTKVLMDFLNRRAFENWNSKAERDLRGQISKFLDSIQGPGRLIEKFKILRFERDPKQKDRIFLDIHLTPYFPAKSFVIKLEGTKGDDENDWNSDYAQDA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9793 - -


  Protein sequence: 459 a.a.    

>T6CP016179 NZ_DS995532:27503-28879 [Bacteroides dorei DSM 17855] [TssC]
MIVMSEQNTQREAAVQQQQAVAQSRNLNAELQILAKFGGFNVLESSVDGIQNMNPERKARRNIFLSDPERAAERKELEKR
LEMWVDMLKGNKSISEMVELCQKKSAAVSGLLSQNQLKAVEEVRQLEKSYRTVMLFYKNTDSDKIKNISIVNASMSQLTD
LDNSFFIDAIANELRANYDRLDLRTNYSLLVIPGYLGSNKVVEKWAKIAHDNKVMIYTDFADLEKPDDVIEMFFDSNLSG
GDVYKSNVCMTCNYLVGRGRYAELGETEDLLIPPSAALAGSVYKTVMAQVTAGKKYGSMSEVDGVAFNLKKSEISEIEKI
GLIPMVKEYGKVMAFSAKTLFNGDNLGLQTYSVVRVFDWVTKVLMDFLNRRAFENWNSKAERDLRGQISKFLDSIQGPGR
LIEKFKILRFERDPKQKDRIFLDIHLTPYFPAKSFVIKLEGTKGDDENDWNSDYAQDA*

  Nucleotide sequence: 1377 bp    

>T6CP016179 NZ_DS995532:27503-28879 [Bacteroides dorei DSM 17855] [TssC]
ATGATAGTTATGAGCGAACAGAATACACAAAGAGAAGCAGCCGTACAGCAGCAACAGGCTGTGGCGCAGTCCAGAAATCT
GAACGCTGAATTGCAGATTCTGGCTAAGTTTGGCGGTTTCAATGTCTTGGAATCTTCCGTGGACGGCATACAGAACATGA
ATCCGGAGCGTAAGGCACGGCGGAACATATTCCTTTCCGACCCCGAACGGGCGGCTGAGCGCAAGGAGCTGGAAAAACGG
CTTGAGATGTGGGTCGATATGTTGAAAGGCAACAAATCCATCAGTGAGATGGTGGAGCTGTGCCAGAAGAAGTCTGCGGC
GGTGTCCGGTCTGCTATCCCAGAACCAGCTGAAAGCGGTGGAAGAGGTCAGGCAGTTGGAGAAGTCCTACCGCACGGTCA
TGCTCTTCTACAAGAATACGGATTCCGACAAGATCAAGAATATCTCCATTGTGAACGCTTCGATGAGCCAGCTTACCGAT
TTGGACAACTCCTTCTTTATCGATGCCATTGCAAACGAGCTTCGTGCGAATTATGACCGTTTGGACTTGCGTACCAACTA
TTCCCTGCTGGTTATCCCGGGATATTTGGGTTCCAACAAGGTTGTTGAAAAATGGGCAAAGATTGCGCATGACAACAAGG
TGATGATTTACACGGATTTCGCTGATCTGGAAAAACCGGATGATGTCATTGAAATGTTCTTTGATTCCAATCTTTCGGGA
GGCGATGTGTACAAATCCAACGTATGTATGACCTGCAACTATTTGGTAGGACGGGGACGCTATGCGGAACTGGGCGAAAC
CGAAGACTTGCTGATTCCTCCTTCTGCGGCATTGGCCGGCAGTGTGTACAAGACGGTAATGGCACAGGTTACCGCCGGTA
AGAAGTATGGTTCCATGAGCGAGGTGGACGGGGTGGCTTTCAACCTGAAAAAAAGCGAGATTTCCGAAATCGAGAAGATT
GGCCTGATTCCGATGGTGAAGGAATACGGCAAGGTGATGGCTTTCTCTGCCAAGACATTGTTCAACGGGGACAACTTGGG
ATTGCAGACCTATTCCGTAGTCCGTGTGTTCGATTGGGTAACGAAAGTGCTGATGGATTTCCTCAACCGCCGTGCCTTTG
AGAACTGGAACAGCAAGGCGGAAAGGGATTTGCGTGGTCAGATCAGCAAGTTTTTGGATAGCATACAGGGTCCCGGACGC
TTGATTGAGAAATTCAAGATTCTTCGTTTCGAGCGCGATCCGAAGCAGAAAGACCGTATTTTCCTCGACATTCACCTGAC
TCCTTATTTCCCGGCAAAGAGTTTTGTCATCAAGTTGGAAGGTACAAAAGGGGATGACGAGAACGACTGGAACAGCGACT
ATGCACAGGATGCATAG