Detailed information of component protein
Summary
| Component ID | T6CP016178 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS01296  (Type iii) |
| Strain | Bacteroides dorei DSM 17855 |
| Replicon | chromosome |
| Sequence | Protein sequence (158 a.a.); Nucleotide sequence (474 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BACDOR_RS16920 |
| Coordinate (Strand) | 27033..27506 (+) |
| NCBI ID | WP_005802596.1 |
| RefSeq | NZ_DS995532 |
| Uniprot ID | A0A417IG26_9FIRM, A0A642PSX0_9BACE, A0A4P6RIZ5_9BACE, A0A5M5M1I4_BACOV, A0A5C6L4A4_9BACT, A0A7J5QMM3_9BACE, A0A3E5DPG8_9BACE, A0A6L6MWG8_9BACT, B6VUX8_9BACT, A0A642EY42_BACFG, A0A174P7T8_BACUN, A0A3E5H7U9_PHOVU, I9B7L9_BACFG |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-157 | MDLGNYGIGGNEVKIDASEGIAEIPQNRTLLVEQLTKDEPVAPEVVAGLTNIDEVFAHFRPEIDIEFADADGAPVEENFRFHNVGDFSVRKMTEQSSFLSGLNAEKQFADRMEKSLRSNKVLQRVLENPETRGAFVNAISAILDDLKNNEKSNPTNE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9949 | - | - |
Protein sequence: 158 a.a.
>T6CP016178 NZ_DS995532:27033-27506 [Bacteroides dorei DSM 17855] [TssB]
MDLGNYGIGGNEVKIDASEGIAEIPQNRTLLVEQLTKDEPVAPEVVAGLTNIDEVFAHFRPEIDIEFADADGAPVEENFR
FHNVGDFSVRKMTEQSSFLSGLNAEKQFADRMEKSLRSNKVLQRVLENPETRGAFVNAISAILDDLKNNEKSNPTNE*
MDLGNYGIGGNEVKIDASEGIAEIPQNRTLLVEQLTKDEPVAPEVVAGLTNIDEVFAHFRPEIDIEFADADGAPVEENFR
FHNVGDFSVRKMTEQSSFLSGLNAEKQFADRMEKSLRSNKVLQRVLENPETRGAFVNAISAILDDLKNNEKSNPTNE*
Nucleotide sequence: 474 bp
>T6CP016178 NZ_DS995532:27033-27506 [Bacteroides dorei DSM 17855] [TssB]
ATGGATCTTGGTAATTATGGAATCGGCGGAAACGAAGTGAAGATTGACGCTTCCGAAGGTATTGCGGAAATTCCACAAAA
TCGAACCTTATTGGTGGAACAGCTGACGAAGGATGAGCCGGTGGCTCCCGAAGTGGTTGCCGGTCTGACCAACATTGACG
AAGTCTTTGCACATTTCCGGCCGGAAATAGATATCGAGTTCGCGGATGCGGACGGTGCTCCCGTAGAGGAAAATTTCCGT
TTCCACAATGTCGGTGATTTTTCTGTCAGGAAAATGACGGAACAGAGTTCATTCTTGTCCGGCCTGAATGCGGAAAAGCA
GTTTGCGGACAGGATGGAGAAGTCGTTGCGTTCCAACAAGGTGCTGCAACGGGTACTGGAAAATCCGGAGACACGTGGAG
CGTTTGTCAATGCGATTTCTGCCATTTTGGACGATTTGAAGAACAATGAGAAGTCTAACCCCACTAATGAATGA
ATGGATCTTGGTAATTATGGAATCGGCGGAAACGAAGTGAAGATTGACGCTTCCGAAGGTATTGCGGAAATTCCACAAAA
TCGAACCTTATTGGTGGAACAGCTGACGAAGGATGAGCCGGTGGCTCCCGAAGTGGTTGCCGGTCTGACCAACATTGACG
AAGTCTTTGCACATTTCCGGCCGGAAATAGATATCGAGTTCGCGGATGCGGACGGTGCTCCCGTAGAGGAAAATTTCCGT
TTCCACAATGTCGGTGATTTTTCTGTCAGGAAAATGACGGAACAGAGTTCATTCTTGTCCGGCCTGAATGCGGAAAAGCA
GTTTGCGGACAGGATGGAGAAGTCGTTGCGTTCCAACAAGGTGCTGCAACGGGTACTGGAAAATCCGGAGACACGTGGAG
CGTTTGTCAATGCGATTTCTGCCATTTTGGACGATTTGAAGAACAATGAGAAGTCTAACCCCACTAATGAATGA