Detailed information of component protein
Summary
| Component ID | T6CP016177 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS01296  (Type iii) |
| Strain | Bacteroides dorei DSM 17855 |
| Replicon | chromosome |
| Sequence | Protein sequence (133 a.a.); Nucleotide sequence (399 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BACDOR_RS16935 |
| Coordinate (Strand) | 23293..23691 (+) |
| NCBI ID | 495107961 |
| RefSeq | NZ_DS995532 |
| Uniprot ID | A0A1F0J119_9BACE, B6VUX5_9BACT, A0A174P3G3_BACUN |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| TssD | PF17642.3 | 1.2e-38 | 1..129 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-132 | MAFKASFKFSDSREFDVLTWRVKFNRDVDPKGRPASDIYGGTIYVEVESTPDTIVLDKMFKQYQPVNGNIVFKKADEDAKMKELVFENGYVVDYEEALNVANQYPMTIKFAISAQTVKMDEATFVQDWPENN |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9896 | - | - |
Protein sequence: 133 a.a.
>T6CP016177 NZ_DS995532:23293-23691 [Bacteroides dorei DSM 17855] [TssD]
MAFKASFKFSDSREFDVLTWRVKFNRDVDPKGRPASDIYGGTIYVEVESTPDTIVLDKMFKQYQPVNGNIVFKKADEDAK
MKELVFENGYVVDYEEALNVANQYPMTIKFAISAQTVKMDEATFVQDWPENN*
MAFKASFKFSDSREFDVLTWRVKFNRDVDPKGRPASDIYGGTIYVEVESTPDTIVLDKMFKQYQPVNGNIVFKKADEDAK
MKELVFENGYVVDYEEALNVANQYPMTIKFAISAQTVKMDEATFVQDWPENN*
Nucleotide sequence: 399 bp
>T6CP016177 NZ_DS995532:23293-23691 [Bacteroides dorei DSM 17855] [TssD]
ATGGCATTTAAAGCGTCATTTAAGTTTTCGGACTCAAGAGAGTTTGATGTACTGACCTGGAGAGTTAAGTTCAATCGTGA
TGTGGACCCCAAAGGCCGTCCGGCATCTGACATTTATGGTGGCACAATCTATGTGGAAGTCGAATCAACTCCCGATACCA
TTGTGCTGGATAAGATGTTCAAGCAGTACCAGCCCGTAAACGGAAACATCGTCTTCAAGAAAGCGGATGAAGATGCCAAA
ATGAAGGAATTGGTGTTCGAAAATGGTTATGTGGTGGATTACGAAGAGGCACTGAATGTGGCTAACCAGTATCCGATGAC
AATCAAGTTCGCCATTTCTGCACAGACCGTGAAGATGGACGAGGCTACATTTGTACAGGATTGGCCGGAAAACAACTAA
ATGGCATTTAAAGCGTCATTTAAGTTTTCGGACTCAAGAGAGTTTGATGTACTGACCTGGAGAGTTAAGTTCAATCGTGA
TGTGGACCCCAAAGGCCGTCCGGCATCTGACATTTATGGTGGCACAATCTATGTGGAAGTCGAATCAACTCCCGATACCA
TTGTGCTGGATAAGATGTTCAAGCAGTACCAGCCCGTAAACGGAAACATCGTCTTCAAGAAAGCGGATGAAGATGCCAAA
ATGAAGGAATTGGTGTTCGAAAATGGTTATGTGGTGGATTACGAAGAGGCACTGAATGTGGCTAACCAGTATCCGATGAC
AATCAAGTTCGCCATTTCTGCACAGACCGTGAAGATGGACGAGGCTACATTTGTACAGGATTGGCCGGAAAACAACTAA