Detailed information of component protein


Summary

Component ID T6CP016176
Component protein type TssH
T6SS ID (Type) T6SS01296 experimental (Type iii)
Strain Bacteroides dorei DSM 17855
Replicon chromosome
Sequence Protein sequence (826 a.a.); Nucleotide sequence (2478 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BACDOR_RS16940
Coordinate (Strand) 20550..23027 (-)
NCBI ID 696360605
RefSeq NZ_DS995532
Uniprot ID UPI000518C714
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 1.6e-41 563..725
AAA_lid_9 PF17871.3 2.7e-24 348..440
ClpB_D2-small PF10431.11 2.8e-16 733..810
AAA PF00004.31 2.3e-12 210..341
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-825 METGVGFINLDDSVKIALNIALAVARENANECYTPSHLLKALLHKDVGLRDFIISIGKDLGYLEEWADVYIEQCPKSTQLSEIKPSERIDAVFRAADDARIQFGLFDINPICVLLALAKPGVAFSSDQLRSFPILEKDIHSIYIGNGQPACPSATTEKSYAPTSASSSFLGKYCVDLTEDAANKLHPVINRDRENRMVMEILGSRSKSNVLIVGDAGVGKTALVYGLAWEIVSHKVPSFLEETRVFELDNASLIAGATYKGEIEDRLKNILKELRNIDNAILFIDEIHVLLDNRQGNTGAGNVLKSELSHGDLTVIGATTIDEYRKIIEPDHAFSRRFEVIQVSEPDIKSAIQMLHSVQKQYVDYHHVRISNEAVAECVRLAKRYIKDRRLPDSAIGLLDMTLSAIKMVNETGKKNVETLLSGLDEIEKDEKDLQEKTEELKTLLFVMHNKLSPILLGVIPDEADIHELQEYEELTGYLRNALNVLLQFAEKKIEEVGIYEVAAVVASKTGIPIGKIQSQEKERLLNMEDYLRRRVVGQDQALKTLTDAILESRSGMNKPGQPIGSFFLLGPTGTGKTELAKALAEALFNDEKSMIRFDMSEFKEEHSAALLYGAPPGYVGYEEGGMLVNKIRQQPYAVVLFDEIEKAHPSVYDIFLQIMDEGKLHDRLGKEGDFSNSIVLFTSNVGSEWLTKQLESGNVPSTTQIMEVMGQYFRPEFLARLSEIVPFSPIREEILLKIFDIQLNGVRKLLDKQGIGITISDDARKMLAHKGFTPKYGARQVAGVIRNYLRRPISRLIINEELGKGKSLEVGLDEQNELTWNIHQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9912 - -


  Protein sequence: 826 a.a.    

>T6CP016176 NZ_DS995532:c23027-20550 [Bacteroides dorei DSM 17855] [TssH]
METGVGFINLDDSVKIALNIALAVARENANECYTPSHLLKALLHKDVGLRDFIISIGKDLGYLEEWADVYIEQCPKSTQL
SEIKPSERIDAVFRAADDARIQFGLFDINPICVLLALAKPGVAFSSDQLRSFPILEKDIHSIYIGNGQPACPSATTEKSY
APTSASSSFLGKYCVDLTEDAANKLHPVINRDRENRMVMEILGSRSKSNVLIVGDAGVGKTALVYGLAWEIVSHKVPSFL
EETRVFELDNASLIAGATYKGEIEDRLKNILKELRNIDNAILFIDEIHVLLDNRQGNTGAGNVLKSELSHGDLTVIGATT
IDEYRKIIEPDHAFSRRFEVIQVSEPDIKSAIQMLHSVQKQYVDYHHVRISNEAVAECVRLAKRYIKDRRLPDSAIGLLD
MTLSAIKMVNETGKKNVETLLSGLDEIEKDEKDLQEKTEELKTLLFVMHNKLSPILLGVIPDEADIHELQEYEELTGYLR
NALNVLLQFAEKKIEEVGIYEVAAVVASKTGIPIGKIQSQEKERLLNMEDYLRRRVVGQDQALKTLTDAILESRSGMNKP
GQPIGSFFLLGPTGTGKTELAKALAEALFNDEKSMIRFDMSEFKEEHSAALLYGAPPGYVGYEEGGMLVNKIRQQPYAVV
LFDEIEKAHPSVYDIFLQIMDEGKLHDRLGKEGDFSNSIVLFTSNVGSEWLTKQLESGNVPSTTQIMEVMGQYFRPEFLA
RLSEIVPFSPIREEILLKIFDIQLNGVRKLLDKQGIGITISDDARKMLAHKGFTPKYGARQVAGVIRNYLRRPISRLIIN
EELGKGKSLEVGLDEQNELTWNIHQ*

  Nucleotide sequence: 2478 bp    

>T6CP016176 NZ_DS995532:c23027-20550 [Bacteroides dorei DSM 17855] [TssH]
ATGGAAACAGGAGTTGGTTTCATCAATCTTGATGATTCTGTAAAAATTGCGCTTAACATAGCACTTGCAGTGGCTCGTGA
AAATGCGAATGAGTGTTATACACCCTCGCATTTGTTGAAGGCTCTACTTCATAAAGATGTAGGGTTAAGAGATTTTATAA
TAAGTATAGGCAAGGATTTAGGCTATCTGGAGGAATGGGCGGACGTATATATCGAACAATGCCCGAAATCCACCCAGTTG
TCCGAAATCAAGCCTTCGGAACGGATTGACGCCGTTTTCCGTGCCGCAGACGATGCACGAATCCAGTTCGGGCTGTTCGA
CATCAATCCCATCTGTGTGCTATTGGCACTGGCAAAGCCCGGTGTCGCTTTTTCCAGCGACCAGCTCAGGTCTTTCCCCA
TTCTGGAAAAGGATATCCATTCCATATATATAGGTAACGGGCAGCCGGCATGTCCTTCCGCCACTACGGAGAAGTCCTAT
GCCCCGACTTCCGCCTCATCCTCCTTCTTGGGCAAATACTGTGTGGATCTAACCGAAGATGCGGCCAACAAGCTGCATCC
GGTCATCAACCGCGACCGTGAAAACCGTATGGTCATGGAGATACTGGGAAGCCGGAGCAAGTCCAATGTCCTGATTGTCG
GTGATGCCGGAGTAGGAAAGACAGCACTGGTTTACGGACTTGCCTGGGAGATAGTCAGCCATAAAGTGCCCTCGTTTCTG
GAAGAAACCCGTGTATTTGAACTGGACAACGCCTCCCTGATTGCGGGAGCCACCTACAAGGGGGAAATCGAGGACCGCCT
GAAAAATATCCTGAAAGAATTGCGGAATATCGACAATGCAATCCTGTTTATTGACGAAATCCATGTATTGCTGGACAACC
GACAAGGAAATACCGGTGCGGGAAATGTATTGAAATCCGAACTGTCGCACGGCGATCTGACCGTCATCGGCGCCACCACC
ATTGACGAATACCGCAAAATCATCGAGCCGGACCATGCTTTCAGCCGCCGTTTCGAGGTCATACAGGTAAGCGAACCGGA
CATAAAGTCCGCTATCCAGATGCTACACTCCGTGCAGAAACAATACGTGGACTACCATCATGTAAGAATCAGCAACGAAG
CCGTAGCCGAATGTGTCCGTCTTGCCAAACGGTATATCAAAGACCGCCGTCTGCCTGATTCCGCCATCGGTCTGCTGGAC
ATGACGCTCTCCGCCATCAAGATGGTCAATGAAACAGGAAAGAAGAATGTGGAGACCCTGCTGTCCGGGCTGGATGAAAT
AGAAAAGGATGAAAAGGACCTTCAGGAAAAGACCGAAGAACTGAAAACGCTGCTTTTCGTAATGCACAACAAATTAAGCC
CCATCCTTTTAGGAGTCATACCCGATGAAGCGGACATTCATGAATTGCAGGAGTATGAAGAACTGACCGGCTATCTGAGA
AACGCATTGAACGTCCTCCTCCAATTTGCAGAGAAGAAAATAGAGGAGGTAGGTATCTATGAGGTAGCCGCCGTTGTCGC
CAGCAAGACAGGCATCCCTATCGGCAAGATACAGTCGCAGGAAAAGGAACGGCTACTCAATATGGAAGACTATCTGAGGC
GACGCGTCGTCGGACAGGACCAGGCCCTGAAGACATTGACGGATGCCATCCTGGAATCCCGTAGCGGCATGAACAAGCCG
GGACAGCCCATCGGCTCCTTCTTCCTGCTGGGACCCACCGGTACCGGCAAGACCGAACTTGCTAAAGCACTGGCGGAGGC
ACTGTTCAATGACGAGAAATCCATGATCCGCTTCGACATGTCCGAGTTCAAGGAAGAACACTCCGCCGCCCTGCTGTACG
GAGCACCTCCGGGATATGTGGGATATGAGGAAGGCGGCATGCTGGTCAATAAAATACGGCAACAGCCATACGCCGTTGTC
CTCTTTGATGAAATAGAGAAAGCGCACCCGTCCGTATATGACATTTTCCTGCAAATCATGGACGAAGGAAAACTGCATGA
CCGTCTGGGCAAGGAAGGAGATTTCTCCAACTCCATCGTGCTGTTCACATCCAATGTAGGAAGCGAGTGGCTGACCAAGC
AACTTGAGTCCGGCAATGTTCCGTCCACCACCCAGATCATGGAGGTAATGGGACAGTATTTCCGTCCGGAGTTTCTGGCA
CGCCTGTCTGAAATCGTTCCGTTCTCCCCCATCCGTGAAGAGATACTCCTGAAAATATTCGACATACAGCTCAATGGAGT
CAGAAAACTTCTGGACAAGCAGGGTATCGGCATCACCATCAGCGATGATGCCCGTAAAATGCTTGCACACAAAGGATTCA
CACCCAAATACGGTGCCCGCCAAGTGGCCGGTGTGATCCGTAACTATCTGCGCAGACCGATTTCACGGCTTATCATCAAC
GAGGAGCTGGGCAAAGGAAAAAGTCTGGAGGTAGGTCTGGACGAACAGAATGAATTAACCTGGAATATTCACCAATAA