Detailed information of component protein


Summary

Component ID T6CP016175
Component protein type TssF
T6SS ID (Type) T6SS01296 experimental (Type iii)
Strain Bacteroides dorei DSM 17855
Replicon chromosome
Sequence Protein sequence (615 a.a.); Nucleotide sequence (1845 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BACDOR_RS16985
Coordinate (Strand) 14727..16571 (-)
NCBI ID 495107944
RefSeq NZ_DS995532
Uniprot ID B6VUW4_9BACT
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 7.4e-05 4..88
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-614 MSTEKYNKEQIRNRMLKYAAAFWGIKKAENFDPVVKLLLEALSNEIYMLGEDFTAIETRLLEKTARILTPDILTSPFPAHGIVHAYPIEPCYLITRASGMYYESDSLTRKLSTGSVSFYPACDTLLHKADVKYMVCDDLLYRIAPTLEKTMIARAETRMPPRTVWLGMAVDESISDLEDFSFYLDFPNLTESYEYLLLLPCTEWSVEGKTVVMEGGIHEKTTIQKEPTRAFFQDYDVMSVIDKEVMDIYSKHFLKVSQSFPLNGSCRKNLPDTLRPCFKEAVLEKMQDKLVWVKIQFPAHFTAEVLEELHAGINIVPVENKTLHEQTTTLEETFRVIPLRTGSYESLLSVHSVKDSDGKNYHELLYPAKDSTESYGTYSIRKGGCERFDSRSARELLGYLSDLLDDETHAFNAVSSIKLQALTIQMEQLMAQMKQTADNMNEFRETPYYLMIDELSGKGQITVKYWTTNCEVGNRIQAGVNLSPNATTYLDPKTLALVSTTYGGKQAPQNRERIDIYKYAFISHGRVLTQNDIASFCKKELGELLVRTEIRNGVEISPMPHEGLIRTKEVHLILGTKLDEPSQEKQIKDNLRTKLSACSPDTFNYRIFIEYNKA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9952 - -


  Protein sequence: 615 a.a.    

>T6CP016175 NZ_DS995532:c16571-14727 [Bacteroides dorei DSM 17855] [TssF]
MSTEKYNKEQIRNRMLKYAAAFWGIKKAENFDPVVKLLLEALSNEIYMLGEDFTAIETRLLEKTARILTPDILTSPFPAH
GIVHAYPIEPCYLITRASGMYYESDSLTRKLSTGSVSFYPACDTLLHKADVKYMVCDDLLYRIAPTLEKTMIARAETRMP
PRTVWLGMAVDESISDLEDFSFYLDFPNLTESYEYLLLLPCTEWSVEGKTVVMEGGIHEKTTIQKEPTRAFFQDYDVMSV
IDKEVMDIYSKHFLKVSQSFPLNGSCRKNLPDTLRPCFKEAVLEKMQDKLVWVKIQFPAHFTAEVLEELHAGINIVPVEN
KTLHEQTTTLEETFRVIPLRTGSYESLLSVHSVKDSDGKNYHELLYPAKDSTESYGTYSIRKGGCERFDSRSARELLGYL
SDLLDDETHAFNAVSSIKLQALTIQMEQLMAQMKQTADNMNEFRETPYYLMIDELSGKGQITVKYWTTNCEVGNRIQAGV
NLSPNATTYLDPKTLALVSTTYGGKQAPQNRERIDIYKYAFISHGRVLTQNDIASFCKKELGELLVRTEIRNGVEISPMP
HEGLIRTKEVHLILGTKLDEPSQEKQIKDNLRTKLSACSPDTFNYRIFIEYNKA*

  Nucleotide sequence: 1845 bp    

>T6CP016175 NZ_DS995532:c16571-14727 [Bacteroides dorei DSM 17855] [TssF]
ATGAGTACAGAAAAATACAATAAAGAGCAAATCAGAAACCGTATGCTGAAATACGCTGCGGCTTTCTGGGGAATAAAAAA
GGCGGAAAACTTCGACCCGGTTGTCAAGCTCCTGCTGGAAGCGTTGTCCAACGAGATATATATGCTGGGAGAGGATTTTA
CCGCCATCGAGACAAGGCTGTTGGAAAAGACCGCCCGAATCCTTACTCCGGACATCCTTACCTCACCCTTTCCCGCACAC
GGCATCGTACACGCCTATCCCATAGAACCGTGTTACCTGATAACCAGGGCATCGGGCATGTATTACGAGAGCGACTCGCT
TACCCGGAAGCTATCGACCGGAAGCGTATCGTTTTATCCCGCCTGCGATACCCTGCTGCACAAAGCCGACGTGAAATATA
TGGTCTGCGACGACCTTCTCTACCGGATAGCCCCTACCTTGGAGAAGACCATGATTGCCCGTGCAGAGACAAGGATGCCT
CCGCGTACCGTCTGGTTAGGAATGGCGGTGGATGAATCCATTTCCGACCTTGAAGACTTTTCGTTCTATCTGGATTTTCC
CAACCTTACGGAAAGCTATGAATATCTGCTCCTGCTCCCCTGTACGGAATGGTCCGTAGAAGGGAAAACAGTCGTGATGG
AAGGGGGAATCCATGAAAAGACAACCATACAGAAAGAACCAACCCGTGCCTTTTTCCAAGACTATGACGTGATGTCCGTC
ATAGACAAGGAAGTCATGGATATTTACAGCAAACATTTTCTGAAAGTATCGCAGTCCTTTCCACTCAACGGTTCCTGCAG
GAAAAACCTTCCGGATACCCTGCGGCCCTGTTTCAAAGAGGCCGTTTTGGAGAAGATGCAGGACAAACTGGTATGGGTGA
AGATACAGTTCCCCGCCCATTTCACAGCGGAAGTCCTTGAAGAACTTCATGCCGGCATCAACATCGTGCCTGTAGAGAAC
AAAACGCTTCACGAACAGACGACCACCCTTGAGGAAACTTTCAGGGTGATACCCTTGCGCACGGGCAGCTACGAATCCCT
TCTGTCTGTACACAGCGTGAAGGATTCTGACGGAAAGAACTACCATGAACTCCTCTATCCCGCAAAGGATTCCACGGAAA
GCTATGGAACCTACTCCATCCGCAAAGGAGGATGCGAGCGTTTCGACTCCCGTTCCGCCAGGGAGCTGCTCGGCTATCTG
TCCGACCTGCTGGATGACGAGACCCATGCCTTCAATGCCGTATCAAGCATCAAGCTACAGGCACTTACCATCCAGATGGA
GCAGCTGATGGCGCAAATGAAACAGACAGCAGACAACATGAACGAGTTCAGGGAAACACCTTATTACCTTATGATTGACG
AACTGTCCGGCAAGGGGCAGATTACCGTCAAATACTGGACAACCAACTGTGAGGTAGGAAACCGGATACAGGCAGGCGTA
AACCTGTCCCCCAACGCCACCACTTACCTGGACCCGAAGACATTGGCTCTGGTAAGTACCACCTACGGCGGGAAACAAGC
CCCCCAAAACAGAGAACGGATTGACATCTACAAATACGCCTTCATTTCGCACGGCCGTGTCCTGACACAGAACGACATAG
CCAGTTTCTGCAAAAAAGAACTCGGCGAACTGCTGGTGCGTACAGAAATCCGGAACGGGGTGGAAATCAGCCCGATGCCG
CACGAAGGACTGATCCGAACCAAAGAAGTCCATCTGATTCTTGGAACGAAACTGGATGAGCCTTCGCAGGAAAAACAGAT
AAAAGACAACCTGCGTACCAAACTTTCGGCCTGTTCGCCGGACACATTCAATTACCGGATATTCATAGAATACAATAAAG
CATAA