Detailed information of component protein


Summary

Component ID T6CP016174
Component protein type TssN
T6SS ID (Type) T6SS01296 experimental (Type iii)
Strain Bacteroides dorei DSM 17855
Replicon chromosome
Sequence Protein sequence (293 a.a.); Nucleotide sequence (879 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BACDOR_RS16990
Coordinate (Strand) 13837..14715 (-)
NCBI ID 492477727
RefSeq NZ_DS995532
Uniprot ID A0A1F0J105_9BACE
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
TssN PF17555.4 4.2e-87 10..282
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-9 MNPVTQHLI
Transmembrane helix 10-29 SSYLLMPLLTVIFGIAAYFI
Inside 30-41 ARKNKLLNNKKL
Transmembrane helix 42-61 IAYLLLCGIILALPGLSGFM
Outside 62-65 DYNF
Transmembrane helix 66-88 MPYAYILLVILYWTAGYYNRLIL
Inside 89-100 RKVFASSKEMPS
Transmembrane helix 101-123 FGIQCLLTVTVMLLGAGLFSVVF
Outside 124-132 NLCNELQYG
Transmembrane helix 133-155 IWASTCLLPFAFPLLYSQTVNSY
Inside 156-292 FDIPIEIYKVWKYSEEYDSDTLYINRERSIVMDVDIFRRVDDPASERITGKASEDVIFGQWFQRMIDDCNLKSPSSPIVYKNEGGAYYEWVFYTKPSFFKRRRYIDPDVTLAGNKLKRHDVIIAKRVANELIKYNEY


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9919 - -


  Protein sequence: 293 a.a.    

>T6CP016174 NZ_DS995532:c14715-13837 [Bacteroides dorei DSM 17855] [TssN]
MNPVTQHLISSYLLMPLLTVIFGIAAYFIARKNKLLNNKKLIAYLLLCGIILALPGLSGFMDYNFMPYAYILLVILYWTA
GYYNRLILRKVFASSKEMPSFGIQCLLTVTVMLLGAGLFSVVFNLCNELQYGIWASTCLLPFAFPLLYSQTVNSYFDIPI
EIYKVWKYSEEYDSDTLYINRERSIVMDVDIFRRVDDPASERITGKASEDVIFGQWFQRMIDDCNLKSPSSPIVYKNEGG
AYYEWVFYTKPSFFKRRRYIDPDVTLAGNKLKRHDVIIAKRVANELIKYNEY*

  Nucleotide sequence: 879 bp    

>T6CP016174 NZ_DS995532:c14715-13837 [Bacteroides dorei DSM 17855] [TssN]
ATGAACCCAGTTACCCAACATCTCATTTCATCGTACCTGCTGATGCCGCTGCTGACCGTGATTTTCGGAATCGCAGCCTA
TTTTATCGCACGCAAGAACAAGCTGCTCAACAACAAAAAACTGATTGCGTATCTGCTGCTGTGCGGCATAATCCTTGCCC
TGCCCGGTCTGTCCGGATTCATGGACTATAACTTCATGCCCTATGCCTACATCCTGTTGGTCATCCTGTACTGGACTGCC
GGATATTACAATCGGCTCATCCTTCGCAAAGTGTTCGCATCAAGCAAGGAAATGCCTTCTTTCGGCATCCAATGCCTGCT
GACGGTTACGGTCATGCTTCTAGGAGCCGGACTCTTTTCCGTAGTGTTCAACCTCTGCAACGAACTCCAGTACGGCATCT
GGGCCTCCACCTGTCTGCTGCCCTTTGCATTTCCACTCCTGTATTCCCAAACGGTGAACAGCTATTTCGACATACCCATT
GAAATTTATAAAGTATGGAAATATTCGGAGGAATATGACTCGGATACCTTGTACATCAACCGTGAACGGAGCATCGTAAT
GGATGTGGATATATTCCGCAGGGTGGATGACCCCGCATCGGAACGCATAACCGGCAAGGCATCCGAGGATGTCATCTTCG
GGCAGTGGTTCCAGCGCATGATTGACGACTGCAACCTCAAATCACCGTCTTCGCCCATCGTATATAAGAATGAAGGAGGA
GCCTATTACGAATGGGTATTCTATACCAAACCGTCCTTTTTCAAGAGACGGCGCTATATAGACCCCGACGTTACACTTGC
CGGCAACAAGCTGAAAAGACACGATGTAATCATAGCCAAACGTGTGGCAAACGAACTTATAAAGTATAACGAATATTAA