Detailed information of component protein


Summary

Component ID T6CP016173
Component protein type TssG
T6SS ID (Type) T6SS01296 experimental (Type iii)
Strain Bacteroides dorei DSM 17855
Replicon chromosome
Sequence Protein sequence (321 a.a.); Nucleotide sequence (963 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BACDOR_RS0121745
Coordinate (Strand) 11682..12644 (-)
NCBI ID 696360543
RefSeq NZ_DS995532
Uniprot ID UPI0005195DCB
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 3.6e-12 200..320
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-320 MTEEQDKIVRFDENSHSFNLPDTDFKAEVVASGLKEAGYDAERTLIFRRGDIRRGFSKDIHDIHPEYSHYDLTDYLYLYVNRRSLYDELPEGIFHKNLYQSEKISKEQVLDEIRIHREEEFFARRFFKPFEISLDHMLVAFQNKERRIDEMNVHPDFVSIFSGQWPVLELLPTHLAVMLVHMLAYMEQITASLSKTGECMTILTGVPMHIKRGDKCVVEVDSCLIPKLGSCILGDDMVLGNSFADGTYQMLVEIGPLSARRMESFFPGAADSKILNALTELFLPSDKEIQIRYIIQQEDARFRLGTPTEQGAYLGISTYL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9946 - -


  Protein sequence: 321 a.a.    

>T6CP016173 NZ_DS995532:c12644-11682 [Bacteroides dorei DSM 17855] [TssG]
MTEEQDKIVRFDENSHSFNLPDTDFKAEVVASGLKEAGYDAERTLIFRRGDIRRGFSKDIHDIHPEYSHYDLTDYLYLYV
NRRSLYDELPEGIFHKNLYQSEKISKEQVLDEIRIHREEEFFARRFFKPFEISLDHMLVAFQNKERRIDEMNVHPDFVSI
FSGQWPVLELLPTHLAVMLVHMLAYMEQITASLSKTGECMTILTGVPMHIKRGDKCVVEVDSCLIPKLGSCILGDDMVLG
NSFADGTYQMLVEIGPLSARRMESFFPGAADSKILNALTELFLPSDKEIQIRYIIQQEDARFRLGTPTEQGAYLGISTYL
*

  Nucleotide sequence: 963 bp    

>T6CP016173 NZ_DS995532:c12644-11682 [Bacteroides dorei DSM 17855] [TssG]
ATGACGGAAGAACAAGATAAAATAGTACGGTTTGACGAAAATTCCCATTCATTCAACCTGCCGGATACCGACTTCAAGGC
GGAAGTGGTGGCCAGCGGACTGAAAGAGGCCGGGTATGATGCAGAGCGTACCCTCATATTCAGACGGGGAGACATCCGGC
GCGGATTCTCGAAAGACATCCATGATATCCACCCGGAATATTCCCATTATGACCTGACGGATTACCTGTATCTTTATGTG
AACAGGAGAAGCCTTTATGACGAGCTGCCCGAAGGCATATTCCACAAGAACCTTTACCAGTCCGAGAAAATATCGAAGGA
ACAGGTGCTGGACGAAATCCGCATCCACCGTGAAGAGGAATTTTTCGCCCGCCGTTTCTTCAAGCCTTTCGAAATCTCCC
TGGACCATATGCTGGTAGCCTTCCAGAACAAGGAACGCCGCATTGACGAGATGAACGTACATCCGGATTTCGTAAGCATC
TTTTCCGGTCAATGGCCCGTACTGGAATTGCTGCCGACCCATCTGGCGGTCATGCTTGTCCATATGCTGGCCTATATGGA
ACAGATTACAGCGAGCCTCTCCAAAACCGGCGAGTGCATGACCATTCTGACTGGTGTGCCCATGCATATCAAGAGAGGAG
ACAAATGCGTGGTGGAAGTGGATTCCTGCCTTATTCCCAAATTGGGAAGCTGCATTCTGGGAGACGACATGGTTCTGGGA
AACAGTTTTGCCGACGGCACCTACCAGATGCTGGTGGAAATCGGTCCCCTGTCCGCCCGACGGATGGAGAGCTTCTTTCC
CGGCGCCGCCGACAGTAAAATACTGAATGCGCTGACAGAACTGTTCCTCCCCTCGGACAAGGAGATACAGATCCGCTACA
TCATCCAGCAGGAAGATGCCCGGTTCAGGCTGGGAACCCCAACCGAACAAGGCGCCTATCTGGGTATCAGCACCTATTTA
TGA