Detailed information of component protein
Summary
| Component ID | T6CP016172 |
| Component protein type | TssO |
| T6SS ID (Type) | T6SS01296  (Type iii) |
| Strain | Bacteroides dorei DSM 17855 |
| Replicon | chromosome |
| Sequence | Protein sequence (171 a.a.); Nucleotide sequence (513 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BACDOR_RS17005 |
| Coordinate (Strand) | 10635..11147 (-) |
| NCBI ID | 490416237 |
| RefSeq | NZ_DS995532 |
| Uniprot ID | A0A1F0J3H7_9BACE, B6VUV8_9BACT, A0A174P2C0_BACUN, I9K7C5_BACFG |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| TssO | PF17561.4 | 8.8e-45 | 8..155 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-15 | MDNNRKTMNKREIFM |
| Transmembrane helix | 16-38 | GHAYVFLFFFLTTVACCLVIFMW |
| Outside | 39-170 | NSDFKMFEQKEFVKIKMNRIKDFQQEQAESQLPVDSLFRKIETFEPGVYAQYEEDDIHYLINNLRNTYERNSWDKRYKLFMHIADFYAMWLSDRKQLWSIGQNISLFKANLEECEIGLQKKEEDLRSGTKNK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.6609 | - | - |
Protein sequence: 171 a.a.
>T6CP016172 NZ_DS995532:c11147-10635 [Bacteroides dorei DSM 17855] [TssO]
MDNNRKTMNKREIFMGHAYVFLFFFLTTVACCLVIFMWNSDFKMFEQKEFVKIKMNRIKDFQQEQAESQLPVDSLFRKIE
TFEPGVYAQYEEDDIHYLINNLRNTYERNSWDKRYKLFMHIADFYAMWLSDRKQLWSIGQNISLFKANLEECEIGLQKKE
EDLRSGTKNK*
MDNNRKTMNKREIFMGHAYVFLFFFLTTVACCLVIFMWNSDFKMFEQKEFVKIKMNRIKDFQQEQAESQLPVDSLFRKIE
TFEPGVYAQYEEDDIHYLINNLRNTYERNSWDKRYKLFMHIADFYAMWLSDRKQLWSIGQNISLFKANLEECEIGLQKKE
EDLRSGTKNK*
Nucleotide sequence: 513 bp
>T6CP016172 NZ_DS995532:c11147-10635 [Bacteroides dorei DSM 17855] [TssO]
ATGGACAACAACAGAAAGACAATGAACAAACGGGAAATATTCATGGGACATGCCTATGTATTCCTGTTCTTTTTCCTGAC
AACCGTAGCGTGTTGTCTGGTAATCTTCATGTGGAACTCAGATTTCAAGATGTTTGAGCAGAAAGAGTTCGTAAAGATCA
AGATGAACCGCATCAAGGATTTCCAGCAGGAACAAGCGGAAAGCCAGTTGCCGGTGGACTCCCTGTTCCGTAAAATAGAA
ACATTTGAACCGGGCGTTTACGCCCAGTATGAAGAAGACGACATCCATTATCTGATAAACAACCTGCGGAACACATACGA
AAGGAACAGCTGGGACAAGCGATACAAGCTGTTCATGCACATTGCCGACTTTTATGCCATGTGGCTGTCCGACAGGAAAC
AGCTATGGAGTATCGGACAAAACATAAGTCTGTTCAAAGCCAATCTGGAGGAGTGCGAGATAGGCTTGCAGAAAAAGGAG
GAAGACTTGCGCTCAGGAACTAAAAACAAATGA
ATGGACAACAACAGAAAGACAATGAACAAACGGGAAATATTCATGGGACATGCCTATGTATTCCTGTTCTTTTTCCTGAC
AACCGTAGCGTGTTGTCTGGTAATCTTCATGTGGAACTCAGATTTCAAGATGTTTGAGCAGAAAGAGTTCGTAAAGATCA
AGATGAACCGCATCAAGGATTTCCAGCAGGAACAAGCGGAAAGCCAGTTGCCGGTGGACTCCCTGTTCCGTAAAATAGAA
ACATTTGAACCGGGCGTTTACGCCCAGTATGAAGAAGACGACATCCATTATCTGATAAACAACCTGCGGAACACATACGA
AAGGAACAGCTGGGACAAGCGATACAAGCTGTTCATGCACATTGCCGACTTTTATGCCATGTGGCTGTCCGACAGGAAAC
AGCTATGGAGTATCGGACAAAACATAAGTCTGTTCAAAGCCAATCTGGAGGAGTGCGAGATAGGCTTGCAGAAAAAGGAG
GAAGACTTGCGCTCAGGAACTAAAAACAAATGA