Detailed information of component protein


Summary

Component ID T6CP016172
Component protein type TssO
T6SS ID (Type) T6SS01296 experimental (Type iii)
Strain Bacteroides dorei DSM 17855
Replicon chromosome
Sequence Protein sequence (171 a.a.); Nucleotide sequence (513 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) BACDOR_RS17005
Coordinate (Strand) 10635..11147 (-)
NCBI ID 490416237
RefSeq NZ_DS995532
Uniprot ID A0A1F0J3H7_9BACE, B6VUV8_9BACT, A0A174P2C0_BACUN, I9K7C5_BACFG
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
TssO PF17561.4 8.8e-45 8..155

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-15 MDNNRKTMNKREIFM
Transmembrane helix 16-38 GHAYVFLFFFLTTVACCLVIFMW
Outside 39-170 NSDFKMFEQKEFVKIKMNRIKDFQQEQAESQLPVDSLFRKIETFEPGVYAQYEEDDIHYLINNLRNTYERNSWDKRYKLFMHIADFYAMWLSDRKQLWSIGQNISLFKANLEECEIGLQKKEEDLRSGTKNK



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.6609 - -



  Protein sequence: 171 a.a.    

>T6CP016172 NZ_DS995532:c11147-10635 [Bacteroides dorei DSM 17855] [TssO]
MDNNRKTMNKREIFMGHAYVFLFFFLTTVACCLVIFMWNSDFKMFEQKEFVKIKMNRIKDFQQEQAESQLPVDSLFRKIE
TFEPGVYAQYEEDDIHYLINNLRNTYERNSWDKRYKLFMHIADFYAMWLSDRKQLWSIGQNISLFKANLEECEIGLQKKE
EDLRSGTKNK*

  Nucleotide sequence: 513 bp    

>T6CP016172 NZ_DS995532:c11147-10635 [Bacteroides dorei DSM 17855] [TssO]
ATGGACAACAACAGAAAGACAATGAACAAACGGGAAATATTCATGGGACATGCCTATGTATTCCTGTTCTTTTTCCTGAC
AACCGTAGCGTGTTGTCTGGTAATCTTCATGTGGAACTCAGATTTCAAGATGTTTGAGCAGAAAGAGTTCGTAAAGATCA
AGATGAACCGCATCAAGGATTTCCAGCAGGAACAAGCGGAAAGCCAGTTGCCGGTGGACTCCCTGTTCCGTAAAATAGAA
ACATTTGAACCGGGCGTTTACGCCCAGTATGAAGAAGACGACATCCATTATCTGATAAACAACCTGCGGAACACATACGA
AAGGAACAGCTGGGACAAGCGATACAAGCTGTTCATGCACATTGCCGACTTTTATGCCATGTGGCTGTCCGACAGGAAAC
AGCTATGGAGTATCGGACAAAACATAAGTCTGTTCAAAGCCAATCTGGAGGAGTGCGAGATAGGCTTGCAGAAAAAGGAG
GAAGACTTGCGCTCAGGAACTAAAAACAAATGA