Detailed information of component protein


Summary

Component ID T6CP016171
Component protein type TssR
T6SS ID (Type) T6SS01296 experimental (Type iii)
Strain Bacteroides dorei DSM 17855
Replicon chromosome
Sequence Protein sequence (831 a.a.); Nucleotide sequence (2493 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BACDOR_RS17015
Coordinate (Strand) 7229..9721 (-)
NCBI ID 696360537
RefSeq NZ_DS995532
Uniprot ID UPI00031C11FB
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
TssR PF17643.3 3.1e-220 35..830
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-830 MKKNCISTLIKGGWICGCIICMASCRPVHRFTRIKNVPREYMRNYSIEGVKAPRSQTLPKHTPWIVFANEAGTTYLSPSGKNEMQSVKYMDAFLVIKRKGDWLRVIQYDPAILKNGKLKEWKQAKYCGWINQNDLLLTRSGFTDIVTGFKNKQVVMLNDSVALATPKTYFANDSVKLFKNTDLTQEAGKIPFYSVVYPYQISEDKGCTLVADKPQLDADSIGHAVIGWIDGRLLTAPEQQLHIDITSLPDSTLVFKDRERKDTLPLSSNDLKRKLQLSASQPAIRYSPVLSYRNNDTSFCFKTRLPMPVIDKRESYVLNVNGNPIYYGTFKNKIEKDLQKINLMFVLEGKENTIQRFPAVVNAIQGLQSQLVNDDSFSFRFGAVLTFNEPDNRKDPICKLTPDYMELLDFLSAKARNAEQLKPTYGRFGSWSGLRIGVEQFNKCPDETNILVVIGDKGFNSEWADSTLVNKLVKNNCRMIGFQLYGGEPDNFNNFVLQIGNMIDCSAPRISRKKRELIVYPEQIRNENEYAEVNHNTYCLDFPNRSMTQGWLVFPQKNESLELEGLTTAVDSMLIQVKFDNTLLSNSLARAFDEVGTHRYRTDSTMTAYYHIRQSGVQPMLSVLPDTEPAWSLPAQPIVLPDSLSSTLDYYLLVNEEEFKRLRKYVEAPSKLIVDYKYEAVKKKKQAKVDICDCPDDYLQTDAEESTVRVKTDSLNAPEYASTRRVRRKLTRHFLSERNRDRYCKVGRKTFLRMPLSEVLQRFTSCPTDYPFFEVYRVKDLRKKKMITDAELDMLIEYFKEKKKLLDEAAGKSFQSNGQTYYWISRDLLP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
LIPO(Sec/SPII) 0.9788 pos: 24-25. MAS-CR. MKKNCISTLIKGGWICGCIICMAS


  Protein sequence: 831 a.a.    

>T6CP016171 NZ_DS995532:c9721-7229 [Bacteroides dorei DSM 17855] [TssR]
MKKNCISTLIKGGWICGCIICMASCRPVHRFTRIKNVPREYMRNYSIEGVKAPRSQTLPKHTPWIVFANEAGTTYLSPSG
KNEMQSVKYMDAFLVIKRKGDWLRVIQYDPAILKNGKLKEWKQAKYCGWINQNDLLLTRSGFTDIVTGFKNKQVVMLNDS
VALATPKTYFANDSVKLFKNTDLTQEAGKIPFYSVVYPYQISEDKGCTLVADKPQLDADSIGHAVIGWIDGRLLTAPEQQ
LHIDITSLPDSTLVFKDRERKDTLPLSSNDLKRKLQLSASQPAIRYSPVLSYRNNDTSFCFKTRLPMPVIDKRESYVLNV
NGNPIYYGTFKNKIEKDLQKINLMFVLEGKENTIQRFPAVVNAIQGLQSQLVNDDSFSFRFGAVLTFNEPDNRKDPICKL
TPDYMELLDFLSAKARNAEQLKPTYGRFGSWSGLRIGVEQFNKCPDETNILVVIGDKGFNSEWADSTLVNKLVKNNCRMI
GFQLYGGEPDNFNNFVLQIGNMIDCSAPRISRKKRELIVYPEQIRNENEYAEVNHNTYCLDFPNRSMTQGWLVFPQKNES
LELEGLTTAVDSMLIQVKFDNTLLSNSLARAFDEVGTHRYRTDSTMTAYYHIRQSGVQPMLSVLPDTEPAWSLPAQPIVL
PDSLSSTLDYYLLVNEEEFKRLRKYVEAPSKLIVDYKYEAVKKKKQAKVDICDCPDDYLQTDAEESTVRVKTDSLNAPEY
ASTRRVRRKLTRHFLSERNRDRYCKVGRKTFLRMPLSEVLQRFTSCPTDYPFFEVYRVKDLRKKKMITDAELDMLIEYFK
EKKKLLDEAAGKSFQSNGQTYYWISRDLLP*

  Nucleotide sequence: 2493 bp    

>T6CP016171 NZ_DS995532:c9721-7229 [Bacteroides dorei DSM 17855] [TssR]
ATGAAAAAGAATTGCATATCGACACTCATAAAAGGAGGATGGATTTGCGGGTGCATCATCTGTATGGCATCCTGCAGACC
GGTACACCGTTTTACGCGGATAAAGAATGTACCCCGTGAATATATGCGAAACTATTCCATAGAAGGGGTAAAGGCTCCCC
GCAGCCAGACACTGCCCAAGCATACCCCGTGGATTGTCTTTGCCAATGAAGCAGGAACGACCTATCTGAGTCCGAGCGGA
AAGAACGAGATGCAGTCTGTGAAATACATGGACGCATTTCTCGTCATCAAGCGAAAAGGAGACTGGCTCAGAGTCATTCA
ATACGACCCAGCCATTCTGAAAAACGGGAAACTGAAAGAATGGAAACAGGCAAAATACTGCGGATGGATCAACCAAAACG
ACCTGTTGCTGACCCGGAGCGGCTTTACCGACATTGTTACCGGATTCAAAAACAAACAGGTGGTCATGCTGAACGACAGC
GTGGCATTGGCCACCCCAAAAACGTATTTTGCCAACGACTCCGTAAAACTGTTCAAAAATACAGACCTGACACAAGAGGC
TGGCAAGATTCCATTTTACAGTGTCGTATATCCTTATCAAATATCGGAAGACAAAGGATGCACCCTCGTGGCAGACAAGC
CGCAGCTTGACGCAGACAGCATAGGGCATGCTGTCATCGGATGGATAGACGGACGCCTGCTGACCGCCCCCGAACAGCAG
CTCCATATAGACATAACCTCGCTGCCGGACAGCACGCTCGTCTTTAAAGACAGGGAACGGAAAGACACCTTGCCGCTATC
ATCCAACGACCTGAAGCGGAAACTGCAACTTTCGGCCAGCCAGCCTGCTATCCGCTACAGCCCGGTACTGTCCTACCGGA
ACAATGACACGAGCTTCTGCTTCAAAACCCGGCTTCCGATGCCGGTCATCGACAAACGGGAAAGCTATGTGCTGAATGTC
AACGGCAATCCAATCTATTACGGGACTTTCAAAAACAAGATAGAGAAGGACCTGCAAAAAATAAACCTCATGTTTGTCCT
GGAAGGAAAAGAGAACACCATCCAACGGTTTCCAGCCGTGGTGAATGCCATCCAGGGACTGCAATCGCAACTGGTGAATG
ACGACAGCTTTTCTTTCAGGTTCGGTGCCGTGCTTACCTTCAATGAACCGGACAACCGGAAAGACCCCATCTGCAAACTG
ACTCCCGACTACATGGAGCTGCTTGATTTCCTTTCCGCCAAAGCACGTAATGCCGAGCAACTGAAACCTACATACGGACG
ATTCGGCAGCTGGTCCGGCCTTCGGATCGGAGTGGAGCAATTCAACAAATGTCCGGATGAAACCAATATTCTGGTTGTCA
TCGGCGATAAAGGGTTCAACAGCGAGTGGGCAGACTCCACCTTGGTGAACAAGCTGGTAAAAAACAACTGCCGCATGATC
GGCTTCCAGCTCTACGGAGGAGAACCGGACAACTTCAACAACTTCGTGCTGCAAATCGGGAACATGATAGACTGCTCGGC
ACCACGCATCAGCCGGAAAAAACGGGAACTGATTGTATATCCCGAACAAATCAGAAATGAAAACGAATATGCGGAGGTGA
ACCATAACACCTATTGTCTGGACTTTCCAAACCGGAGCATGACACAGGGATGGCTGGTGTTTCCGCAAAAGAACGAATCG
CTGGAACTGGAAGGACTGACCACCGCCGTGGATTCCATGCTGATACAAGTGAAGTTTGACAATACCCTGCTGAGCAACAG
CCTGGCAAGGGCATTCGACGAAGTGGGTACACACCGATATAGGACAGATTCGACAATGACAGCTTATTACCATATCCGCC
AGTCGGGGGTACAACCCATGCTATCCGTACTTCCGGATACCGAACCCGCCTGGAGCCTGCCTGCACAGCCAATCGTACTG
CCGGACTCGCTGTCCTCCACACTGGACTATTATCTGCTTGTCAACGAAGAGGAGTTCAAACGGTTGAGAAAGTATGTGGA
AGCACCCTCCAAGCTGATTGTTGACTATAAATACGAAGCGGTCAAAAAGAAAAAGCAAGCGAAGGTGGATATCTGCGATT
GTCCGGACGACTACCTACAGACAGATGCCGAAGAATCTACCGTACGTGTAAAGACGGACAGCCTGAACGCACCGGAATAT
GCCTCAACCCGACGTGTAAGAAGAAAACTGACCAGACATTTCCTTTCAGAGCGCAACAGGGACAGATATTGCAAGGTAGG
GAGAAAGACTTTCCTGAGAATGCCCCTGTCAGAGGTCTTGCAAAGGTTTACCTCCTGCCCGACCGACTATCCTTTCTTTG
AAGTTTACCGTGTCAAGGACTTGCGGAAAAAGAAAATGATTACGGATGCGGAGCTGGACATGCTGATTGAATATTTCAAG
GAAAAGAAAAAACTGCTAGACGAAGCCGCCGGCAAGTCGTTCCAGTCCAACGGGCAGACATACTATTGGATCAGCCGCGA
CCTATTACCATAG