Detailed information of component protein


Summary

Component ID T6CP015997
Component protein type TssG
T6SS ID (Type) T6SS01289 experimental (Type i1)
Strain Vibrio cholerae DL4211
Replicon chromosome
Sequence Protein sequence (339 a.a.); Nucleotide sequence (1017 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BLX44_RS02385
Coordinate (Strand) 72512..73528 (-)
NCBI ID 446432325
RefSeq NZ_MOLL01000005
Uniprot ID A0A023PRH7_VIBCL
KEGG ID vcz:VAB027_918
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1.1e-88 28..324
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-338 MGHTERNAAVDLNSDPAQASPLSLPGNVREYNFYQLVELLQKLADINPESEEWERDCRLVFSANPSLGFSPSDVMALEARDDERWVMLTNFFGLSGAQSPLPGFILEQLVTEEPGGYKQPFLDFFNNRLINLVYRVWRKYRYYVRFQPGAQDVFSAQLFALVGLGDPDLRGETPINWCKMLAYAGTLAGRSRSPQVVAGIIAHCFDLPDVSIRQWVRRRVSIDRSQQLALGKQNARLGMDTVIGESVIDCSGKFIICIKRLSRSRFADFLPSGKEYQPLCKLVEFILREQMAYDLELAMDEREAPLFCLDTKQNIALGWTSFLGQDAANKHVLIQVRQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9792 - -


  Protein sequence: 339 a.a.    

>T6CP015997 NZ_MOLL01000005:c73528-72512 [Vibrio cholerae] [TssG]
MGHTERNAAVDLNSDPAQASPLSLPGNVREYNFYQLVELLQKLADINPESEEWERDCRLVFSANPSLGFSPSDVMALEAR
DDERWVMLTNFFGLSGAQSPLPGFILEQLVTEEPGGYKQPFLDFFNNRLINLVYRVWRKYRYYVRFQPGAQDVFSAQLFA
LVGLGDPDLRGETPINWCKMLAYAGTLAGRSRSPQVVAGIIAHCFDLPDVSIRQWVRRRVSIDRSQQLALGKQNARLGMD
TVIGESVIDCSGKFIICIKRLSRSRFADFLPSGKEYQPLCKLVEFILREQMAYDLELAMDEREAPLFCLDTKQNIALGWT
SFLGQDAANKHVLIQVRQ*

  Nucleotide sequence: 1017 bp    

>T6CP015997 NZ_MOLL01000005:c73528-72512 [Vibrio cholerae] [TssG]
ATGGGGCACACAGAGCGGAATGCAGCCGTTGATCTGAATTCAGATCCAGCGCAAGCCTCTCCGTTGAGCTTGCCAGGCAA
TGTACGGGAATACAACTTCTACCAACTGGTTGAGCTGTTGCAAAAACTGGCTGATATCAATCCCGAATCGGAAGAGTGGG
AGCGCGATTGCCGCTTGGTGTTCAGTGCTAACCCGAGCCTTGGATTTTCGCCCAGTGATGTGATGGCGCTTGAAGCGCGT
GACGATGAACGTTGGGTTATGTTGACCAACTTTTTTGGCCTTTCCGGTGCACAGTCGCCTCTGCCGGGGTTCATCCTTGA
GCAATTGGTGACGGAAGAGCCTGGGGGGTATAAGCAGCCGTTTCTCGATTTTTTCAATAACCGATTGATTAATTTGGTTT
ATCGCGTTTGGCGTAAATACCGTTACTACGTACGTTTTCAGCCCGGTGCGCAGGATGTGTTCTCTGCACAGCTGTTTGCG
CTGGTGGGGTTGGGCGATCCTGACCTTCGCGGTGAAACGCCGATCAACTGGTGCAAAATGCTGGCTTACGCGGGCACGCT
GGCCGGACGTAGCCGTTCGCCACAAGTCGTGGCCGGCATTATTGCTCACTGTTTTGATTTACCGGATGTCTCCATTCGCC
AGTGGGTCAGACGTCGGGTATCGATTGATCGGAGTCAGCAATTGGCGCTGGGCAAGCAGAATGCGCGGTTGGGGATGGAC
ACGGTGATTGGCGAGTCCGTTATTGATTGCAGTGGAAAATTTATTATCTGTATCAAACGGTTATCTCGCAGTCGTTTTGC
TGACTTTTTGCCCTCCGGTAAAGAGTATCAGCCACTTTGCAAGCTGGTGGAGTTTATTTTGCGCGAACAAATGGCGTATG
ACCTCGAGCTGGCGATGGATGAACGAGAAGCGCCGCTGTTTTGTCTGGATACTAAACAGAATATCGCCCTCGGCTGGACT
TCGTTTCTTGGCCAAGATGCAGCCAATAAACATGTGTTAATTCAAGTAAGGCAATAA