Detailed information of component protein


Summary

Component ID T6CP015991
Component protein type TssA
T6SS ID (Type) T6SS01289 experimental (Type i1)
Strain Vibrio cholerae DL4211
Replicon chromosome
Sequence Protein sequence (470 a.a.); Nucleotide sequence (1410 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BLX44_RS02345
Coordinate (Strand) 62121..63530 (-)
NCBI ID 446348231
RefSeq NZ_MOLL01000005
Uniprot ID D7HAU1_VIBCL, A0A023PTF2_VIBCL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 1.8e-74 216..464
ImpA_N PF06812.14 9.6e-25 12..125
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-469 MEMTEYRQCVAKPISSSNPVGERLVDHPLFDFIEDQMMKVGSLSHASVQWDEVEHSTLKLLGEQSKDIKLLVYLLQCLHNQVTPTRLITSFAVMSEFLNQYWNDSYPAPGARGNLPRRKFFSQMAQRFTTVIEKFDFHHLDEADRQALQAAVEEWQQAVEKQGLSSELVESVVVRITAEIKRAEQRQQVTAQSSAERETPSAATPSPAASMVVDHSSDKAAKQTLLKVADFLAEQEFGIALSIRLRRFAVWGSITSLPDHKPDGETLLRGMQADRVKDYQDQLRHPDLALWRKVEQSLTMAPYWFEGQWMSYTIAQQLGKSDWCQAIAEETQQFLRRLPSLLELKFKGGEPFVSDSVKEWLASVGQSQGAAGQSVGGDWQEKRKEAFQLAKEGGIAVALSMLNDGLVSAVEPRDKFYWRLLSADLLRANHLDAMAGEQYQTLLNQVTTLSVPEWEPSLVEQIQRYTTSE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9958 - -


  Protein sequence: 470 a.a.    

>T6CP015991 NZ_MOLL01000005:c63530-62121 [Vibrio cholerae] [TssA]
MEMTEYRQCVAKPISSSNPVGERLVDHPLFDFIEDQMMKVGSLSHASVQWDEVEHSTLKLLGEQSKDIKLLVYLLQCLHN
QVTPTRLITSFAVMSEFLNQYWNDSYPAPGARGNLPRRKFFSQMAQRFTTVIEKFDFHHLDEADRQALQAAVEEWQQAVE
KQGLSSELVESVVVRITAEIKRAEQRQQVTAQSSAERETPSAATPSPAASMVVDHSSDKAAKQTLLKVADFLAEQEFGIA
LSIRLRRFAVWGSITSLPDHKPDGETLLRGMQADRVKDYQDQLRHPDLALWRKVEQSLTMAPYWFEGQWMSYTIAQQLGK
SDWCQAIAEETQQFLRRLPSLLELKFKGGEPFVSDSVKEWLASVGQSQGAAGQSVGGDWQEKRKEAFQLAKEGGIAVALS
MLNDGLVSAVEPRDKFYWRLLSADLLRANHLDAMAGEQYQTLLNQVTTLSVPEWEPSLVEQIQRYTTSE*

  Nucleotide sequence: 1410 bp    

>T6CP015991 NZ_MOLL01000005:c63530-62121 [Vibrio cholerae] [TssA]
ATGGAAATGACTGAATACCGTCAGTGTGTGGCCAAACCGATCAGCAGTAGCAATCCTGTCGGAGAGCGGCTAGTCGATCA
CCCACTGTTTGATTTTATTGAGGATCAGATGATGAAAGTGGGCTCTCTCTCTCACGCTTCAGTGCAGTGGGATGAAGTGG
AGCACAGCACTCTCAAACTGCTTGGTGAACAGAGTAAAGACATCAAGCTTTTGGTTTACCTGCTGCAGTGTCTGCATAAC
CAAGTTACCCCGACGCGCCTTATTACCTCGTTTGCGGTGATGAGTGAGTTCCTCAATCAATATTGGAACGACAGTTATCC
AGCGCCGGGCGCACGTGGCAATCTGCCGCGACGTAAATTTTTCAGCCAGATGGCGCAACGTTTTACCACGGTGATCGAAA
AGTTCGATTTTCATCATCTGGATGAAGCGGATCGCCAAGCGCTACAAGCGGCGGTTGAAGAGTGGCAACAAGCCGTTGAG
AAACAAGGGCTCTCTTCTGAGTTGGTGGAGTCTGTGGTGGTGCGAATTACCGCGGAGATCAAACGCGCAGAGCAGCGCCA
GCAAGTGACGGCGCAAAGCAGCGCGGAGCGTGAAACACCAAGTGCTGCAACGCCTTCTCCTGCGGCGAGCATGGTGGTGG
ATCATTCGAGTGACAAAGCAGCGAAACAAACCCTACTCAAAGTGGCAGATTTTCTTGCCGAACAAGAGTTTGGTATCGCG
CTGTCGATTCGTCTGCGCCGCTTTGCGGTGTGGGGCAGCATTACCTCATTGCCCGATCATAAACCCGATGGTGAAACACT
GCTGCGTGGAATGCAGGCGGATCGCGTCAAGGATTACCAAGATCAACTCCGTCACCCCGATTTAGCCTTGTGGCGCAAAG
TCGAACAGAGCTTAACCATGGCTCCTTATTGGTTTGAAGGACAGTGGATGAGTTACACCATTGCCCAGCAACTCGGCAAA
AGTGATTGGTGTCAGGCGATTGCCGAAGAAACACAACAGTTTTTACGTCGTTTGCCTTCGCTGCTTGAGCTCAAATTCAA
AGGCGGAGAGCCGTTTGTCAGCGATTCGGTCAAAGAGTGGCTGGCGAGTGTAGGTCAGAGCCAAGGTGCTGCGGGGCAAT
CGGTCGGCGGAGATTGGCAAGAGAAGCGTAAAGAGGCGTTTCAACTGGCTAAAGAAGGTGGAATCGCCGTGGCACTTTCC
ATGCTCAATGATGGCTTGGTGAGTGCGGTGGAGCCGCGTGACAAATTTTACTGGCGATTGCTATCGGCGGATCTGCTGCG
GGCAAATCATCTCGATGCGATGGCTGGTGAACAGTATCAAACTCTACTCAATCAGGTAACGACGCTGTCTGTTCCTGAGT
GGGAGCCGAGTTTAGTGGAACAAATTCAAAGATATACAACGTCAGAGTAA