Detailed information of component protein


Summary

Component ID T6CP015989
Component protein type TssA
T6SS ID (Type) T6SS01289 experimental (Type i1)
Strain Vibrio cholerae DL4211
Replicon chromosome
Sequence Protein sequence (421 a.a.); Nucleotide sequence (1263 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BLX44_RS02335
Coordinate (Strand) 57247..58509 (-)
NCBI ID 445995224
RefSeq NZ_MOLL01000005
Uniprot ID A0A023PRI1_VIBCL
KEGG ID vcx:VAA049_1787, vcz:VAB027_908
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 1.3e-08 25..99
Cytochrom_B562 PF07361.13 8e-05 327..397
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-200 MSNVIFIDNVCYRLTNDSEEIRGLEPYAKVREEINRRFNPIAGGTDWAVVKEYCEQLACNQGMDFLICGYYAVACLKTQGLAGYATGMELMSASLANQGECDVKSAKVRKEILDWVNARVVQELKALKPTYESLRDLYRAERHCERLHQLFEQQQTEYKVDFEGVGFALFEHIDRIETQYHSLLKKQEKAQPPKLKFWQR
Transmembrane helix 201-223 GYALFTLGVLGVALGVVGGYWGW
Outside 224-420 PWFYTTPYAAPQRITTLNEASQTQALLNDSSTSERARWQHDLIPLYRDTLQQNLTISFSEPKRHAITQLNLLRTLYPENEQVNALSQEFALQQQQALEQTALFVAKFSEIRTKMANIALLAKRGKWAELEKQTKSLEEFAVSLSPIYGRVDYVQGLLEQGDVTNAQKEFAILKQRLDSLSWKIAELEQRIGDAALLQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9722 - -


  Protein sequence: 421 a.a.    

>T6CP015989 NZ_MOLL01000005:c58509-57247 [Vibrio cholerae] [TssA]
MSNVIFIDNVCYRLTNDSEEIRGLEPYAKVREEINRRFNPIAGGTDWAVVKEYCEQLACNQGMDFLICGYYAVACLKTQG
LAGYATGMELMSASLANQGECDVKSAKVRKEILDWVNARVVQELKALKPTYESLRDLYRAERHCERLHQLFEQQQTEYKV
DFEGVGFALFEHIDRIETQYHSLLKKQEKAQPPKLKFWQRGYALFTLGVLGVALGVVGGYWGWPWFYTTPYAAPQRITTL
NEASQTQALLNDSSTSERARWQHDLIPLYRDTLQQNLTISFSEPKRHAITQLNLLRTLYPENEQVNALSQEFALQQQQAL
EQTALFVAKFSEIRTKMANIALLAKRGKWAELEKQTKSLEEFAVSLSPIYGRVDYVQGLLEQGDVTNAQKEFAILKQRLD
SLSWKIAELEQRIGDAALLQ*

  Nucleotide sequence: 1263 bp    

>T6CP015989 NZ_MOLL01000005:c58509-57247 [Vibrio cholerae] [TssA]
ATGTCCAATGTGATTTTTATTGATAACGTTTGCTACCGATTAACCAATGATTCTGAGGAGATTCGCGGATTAGAGCCCTA
TGCGAAGGTTCGTGAGGAGATAAACCGCCGCTTTAATCCGATTGCCGGGGGCACGGATTGGGCAGTGGTAAAAGAGTACT
GTGAACAACTGGCCTGTAACCAAGGAATGGACTTTCTGATCTGCGGTTACTATGCGGTAGCCTGCCTGAAAACTCAGGGG
CTGGCGGGGTATGCCACCGGCATGGAACTGATGAGTGCAAGCCTTGCTAACCAAGGTGAGTGTGATGTGAAAAGCGCCAA
AGTGCGCAAAGAGATCCTTGATTGGGTCAATGCACGTGTAGTGCAGGAACTGAAAGCACTTAAACCAACTTATGAGTCGC
TGCGAGATCTGTATCGGGCTGAGCGCCATTGCGAGCGGTTACATCAGCTGTTTGAACAGCAACAAACCGAATACAAAGTA
GACTTCGAAGGGGTCGGGTTTGCTCTGTTTGAACACATAGACAGAATTGAAACCCAATACCACAGCTTATTGAAAAAGCA
GGAGAAGGCTCAGCCACCTAAGCTTAAGTTTTGGCAGCGCGGTTACGCGTTGTTCACTCTAGGTGTACTTGGGGTTGCAC
TGGGAGTGGTGGGGGGCTACTGGGGGTGGCCTTGGTTTTATACCACGCCTTATGCCGCGCCACAGCGCATCACCACGTTG
AATGAGGCCTCTCAAACTCAAGCACTGCTCAACGACTCTTCCACAAGTGAGCGTGCGCGTTGGCAACATGATCTGATCCC
GCTGTATCGCGATACTTTGCAGCAGAATTTAACCATCTCGTTTAGTGAACCTAAGCGACATGCCATCACTCAGCTGAATC
TATTGCGCACTCTTTATCCTGAAAACGAGCAAGTGAATGCACTGAGTCAAGAGTTTGCCCTTCAGCAGCAACAAGCGTTG
GAGCAAACCGCGCTGTTCGTGGCTAAGTTCAGCGAAATTCGCACCAAAATGGCCAATATCGCGTTACTGGCTAAGCGAGG
GAAATGGGCTGAGTTAGAAAAGCAGACCAAATCATTAGAAGAGTTCGCGGTCAGCCTATCACCGATTTATGGTCGAGTTG
ACTATGTGCAAGGCCTCCTTGAACAGGGCGATGTCACAAATGCCCAGAAAGAGTTTGCGATCCTCAAACAAAGGCTAGAT
AGCCTAAGTTGGAAAATTGCCGAGCTTGAGCAGCGTATCGGCGATGCGGCTTTGTTGCAGTGA