Detailed information of component protein


Summary

Component ID T6CP015893
Component protein type TssI
T6SS ID (Type) T6SS01278 experimental (Type i1)
Strain Aliivibrio fischeri strain FQ-A001
Replicon chromosome
Sequence Protein sequence (693 a.a.); Nucleotide sequence (2079 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) VFFQA001_RS15600
Coordinate (Strand) 352218..354296 (-)
NCBI ID 1027713327
RefSeq NZ_SJSX01000004
Uniprot ID UPI0007C46849
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 5e-77 27..331
Phage_base_V PF04717.14 2.9e-15 387..455

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-692 MVSDIEFKFEVLGTEHEFRVESFNVVEELSKPFHVSLSLLSLDADITFDELIRKPALLSIFGQGVGTARQFHGVVNEVRYLGEGRRFSRYQITLVPQLWFLTQRQDCRIFQEKSVVDIVTEVLDGAAVTDYRFDISALYQTKEYVLQYRESDSHFVQRLLAEHGLWYYFEHTAANHTMVIVDKNDAIAELENTPLNSSYVGPVIYQADGGGNADREHIFDLESINRVRTGHVTHTDYNYEQPRIPQKMESSGLIDTDLAFFDYPGRYIEPSQGLVRADELMAESIVDNYQIEAASNVMRLIPGYSFILDKHPRRALNRDYTILTVTHSGYDPQVHEDEANEMPTTYQNQFSCLPRDIEFKAPKIAAPVVDGPQTAVVVGPAGEEIYTDKLGRIKVQFHWDRYGQSDEHSSCWIRVSQSMAAPTWGAVYLPRIGHEVVVAFLEGDPDRPLVTGAVYNGLHYPPYSLPENKTRTTFRTQTHKGTGYNELSFEDEANQEEVYIHAQKDMSTKVLNNRYRTIGQDEFLIVERHQTNEVKGDHKETIEGHKTTTVNSTFTETVEQDVTVKYNANETQSVTNNSTLDIGDNRTTSIGKNDDLSVTENSNLSVGASRNSDISADDNQTVGGNLTVSVQGNTSYKTDGATQIISGSKIVLQTGSSSLVMSSDGTIKLAGNAITIEGSSTVTVKGGKVAVN



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9945 - -



  Protein sequence: 693 a.a.    

>T6CP015893 NZ_SJSX01000004:c354296-352218 [Aliivibrio fischeri] [TssI]
MVSDIEFKFEVLGTEHEFRVESFNVVEELSKPFHVSLSLLSLDADITFDELIRKPALLSIFGQGVGTARQFHGVVNEVRY
LGEGRRFSRYQITLVPQLWFLTQRQDCRIFQEKSVVDIVTEVLDGAAVTDYRFDISALYQTKEYVLQYRESDSHFVQRLL
AEHGLWYYFEHTAANHTMVIVDKNDAIAELENTPLNSSYVGPVIYQADGGGNADREHIFDLESINRVRTGHVTHTDYNYE
QPRIPQKMESSGLIDTDLAFFDYPGRYIEPSQGLVRADELMAESIVDNYQIEAASNVMRLIPGYSFILDKHPRRALNRDY
TILTVTHSGYDPQVHEDEANEMPTTYQNQFSCLPRDIEFKAPKIAAPVVDGPQTAVVVGPAGEEIYTDKLGRIKVQFHWD
RYGQSDEHSSCWIRVSQSMAAPTWGAVYLPRIGHEVVVAFLEGDPDRPLVTGAVYNGLHYPPYSLPENKTRTTFRTQTHK
GTGYNELSFEDEANQEEVYIHAQKDMSTKVLNNRYRTIGQDEFLIVERHQTNEVKGDHKETIEGHKTTTVNSTFTETVEQ
DVTVKYNANETQSVTNNSTLDIGDNRTTSIGKNDDLSVTENSNLSVGASRNSDISADDNQTVGGNLTVSVQGNTSYKTDG
ATQIISGSKIVLQTGSSSLVMSSDGTIKLAGNAITIEGSSTVTVKGGKVAVN*

  Nucleotide sequence: 2079 bp    

>T6CP015893 NZ_SJSX01000004:c354296-352218 [Aliivibrio fischeri] [TssI]
ATGGTTAGCGATATAGAATTTAAGTTTGAAGTTCTTGGCACAGAACACGAATTTCGTGTCGAGAGCTTTAATGTAGTTGA
GGAGCTGTCTAAACCGTTTCATGTCAGCTTATCATTACTTTCACTTGATGCAGATATTACGTTTGATGAATTGATCAGAA
AACCTGCATTATTAAGTATATTTGGTCAAGGTGTTGGAACTGCACGTCAGTTTCATGGTGTCGTGAATGAAGTTCGTTAT
TTAGGTGAAGGACGTCGTTTTTCACGTTATCAAATTACGTTAGTACCGCAGTTGTGGTTTTTAACGCAACGTCAAGATTG
TCGTATTTTCCAAGAAAAATCAGTGGTTGATATTGTTACTGAAGTATTAGATGGTGCAGCAGTAACTGATTATCGATTTG
ATATTTCGGCTTTATATCAGACAAAAGAATACGTTTTACAATATCGAGAAAGTGATAGTCATTTTGTACAGCGTTTGTTG
GCTGAGCACGGCCTATGGTACTACTTTGAACATACAGCAGCTAATCACACAATGGTTATTGTTGATAAAAATGACGCTAT
TGCAGAGTTGGAAAATACTCCGTTAAATTCTTCATATGTTGGCCCTGTTATCTACCAAGCTGATGGTGGTGGCAATGCGG
ATAGAGAACATATCTTTGATTTAGAATCAATTAATCGAGTACGTACCGGCCATGTAACTCATACTGATTATAATTATGAA
CAGCCACGAATTCCTCAAAAAATGGAAAGCTCGGGCCTAATTGATACTGACTTAGCTTTTTTTGATTATCCTGGACGTTA
TATTGAGCCGTCTCAAGGTTTGGTTCGTGCTGATGAGCTGATGGCTGAAAGTATTGTTGATAATTATCAGATTGAAGCTG
CAAGTAATGTAATGCGATTAATTCCGGGGTACAGTTTTATTTTAGATAAACACCCAAGAAGAGCGCTTAATCGAGATTAT
ACAATTTTGACGGTAACGCACAGTGGTTATGATCCTCAAGTTCATGAAGATGAAGCCAATGAAATGCCAACCACATATCA
AAATCAGTTTAGTTGTTTACCGCGTGATATTGAATTTAAGGCACCTAAGATTGCAGCTCCTGTTGTTGATGGCCCGCAAA
CCGCTGTTGTTGTTGGCCCAGCAGGTGAAGAAATTTATACTGATAAGCTTGGGCGTATCAAAGTGCAATTTCATTGGGAT
CGTTATGGTCAAAGTGATGAGCATTCAAGTTGTTGGATCCGTGTTAGTCAGTCAATGGCAGCTCCGACATGGGGCGCTGT
ATATTTACCAAGAATTGGTCATGAAGTAGTCGTTGCTTTTTTAGAGGGGGATCCTGACCGTCCATTAGTTACAGGTGCGG
TATATAACGGGCTTCATTACCCGCCATATTCTTTACCTGAAAATAAAACACGCACAACCTTTAGAACTCAAACTCATAAA
GGAACAGGGTATAACGAGTTAAGCTTTGAAGATGAAGCTAACCAAGAAGAAGTTTATATTCACGCACAAAAAGACATGTC
GACCAAAGTCTTGAATAATCGCTATAGAACTATTGGTCAAGATGAGTTTTTAATTGTCGAACGTCATCAAACCAATGAAG
TGAAAGGCGATCACAAAGAAACGATTGAAGGGCATAAAACAACAACAGTTAATAGTACGTTTACTGAAACGGTCGAACAA
GATGTAACGGTTAAATACAATGCAAATGAAACGCAATCAGTAACCAATAATTCAACATTAGATATTGGTGACAACCGTAC
AACAAGTATTGGTAAAAATGATGACTTGAGCGTAACAGAAAATAGTAATTTGTCGGTTGGGGCATCTCGTAATAGTGATA
TTTCTGCCGATGATAATCAAACCGTTGGAGGAAATTTAACGGTTTCTGTCCAAGGAAATACATCTTATAAGACTGATGGC
GCAACGCAAATTATTAGTGGCAGTAAAATTGTATTGCAAACAGGAAGTTCTTCTTTAGTCATGAGCAGTGACGGCACTAT
TAAATTAGCAGGTAATGCGATTACTATTGAAGGTTCAAGTACCGTAACAGTGAAAGGTGGTAAGGTTGCAGTTAACTAA