Detailed information of component protein


Summary

Component ID T6CP015892
Component protein type TssA
T6SS ID (Type) T6SS01278 experimental (Type i1)
Strain Aliivibrio fischeri strain FQ-A001
Replicon chromosome
Sequence Protein sequence (520 a.a.); Nucleotide sequence (1560 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFFQA001_RS15570
Coordinate (Strand) 344804..346363 (-)
NCBI ID 1597593409
RefSeq NZ_SJSX01000004
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 1.6e-63 239..487
ImpA_N PF06812.14 6.3e-24 10..120
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-519 MTSLNVELLLKPISEASPTGEESKYEFCYELMELEIKKFGSLFGETVDWKVVETNAIEVLTTYSKDLKAICYLIRALIERNGFEGLEEGLNLLKQNLVLFGTDLYPQRKRARDGAMEWFVAQLETALPKLDSSTTNWENVTSYLQKINEISDQYYEVFPDSEVEFYLITSVLNGISQRVVGAGETNTDTSRNTVCEPEPLVEETTSTVTEVKTPVQAVTQAPRTVNTVNQEVDIDTDFTSPSASKRTLKKVAEFMLHSDISMPLAYRLHRNCTWCEVDELPPHDNDKKTPLSLAVSQDQLSEYRDKAKQETEAEVIKRLERTLTDAPFWLTGHYLMFQMLTNLDHHEAAEAVKQETQHFISQLEGIELLTFANSIPFADEDTLKWLSSNTASVPVAVASVSVDYTEDDSLVEGEVTLENLGEYVSRIAQNLASDPSGRGQWMLHYKLVKAYRFVGLLPLCLPYIEKMWSIKEEINLSNWEPHLCNQLDLLVNEVLSEMYPIKEHMPEKYQQWLSINNTN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9747 - -


  Protein sequence: 520 a.a.    

>T6CP015892 NZ_SJSX01000004:c346363-344804 [Aliivibrio fischeri] [TssA]
MTSLNVELLLKPISEASPTGEESKYEFCYELMELEIKKFGSLFGETVDWKVVETNAIEVLTTYSKDLKAICYLIRALIER
NGFEGLEEGLNLLKQNLVLFGTDLYPQRKRARDGAMEWFVAQLETALPKLDSSTTNWENVTSYLQKINEISDQYYEVFPD
SEVEFYLITSVLNGISQRVVGAGETNTDTSRNTVCEPEPLVEETTSTVTEVKTPVQAVTQAPRTVNTVNQEVDIDTDFTS
PSASKRTLKKVAEFMLHSDISMPLAYRLHRNCTWCEVDELPPHDNDKKTPLSLAVSQDQLSEYRDKAKQETEAEVIKRLE
RTLTDAPFWLTGHYLMFQMLTNLDHHEAAEAVKQETQHFISQLEGIELLTFANSIPFADEDTLKWLSSNTASVPVAVASV
SVDYTEDDSLVEGEVTLENLGEYVSRIAQNLASDPSGRGQWMLHYKLVKAYRFVGLLPLCLPYIEKMWSIKEEINLSNWE
PHLCNQLDLLVNEVLSEMYPIKEHMPEKYQQWLSINNTN*

  Nucleotide sequence: 1560 bp    

>T6CP015892 NZ_SJSX01000004:c346363-344804 [Aliivibrio fischeri] [TssA]
ATGACAAGTTTGAATGTTGAACTGTTATTGAAACCGATATCTGAAGCTTCGCCTACTGGTGAAGAATCAAAGTACGAGTT
TTGTTATGAATTAATGGAACTGGAAATTAAAAAGTTTGGTTCTTTGTTTGGTGAAACCGTCGATTGGAAAGTGGTAGAGA
CAAATGCTATTGAAGTACTGACCACTTATAGTAAAGATTTAAAAGCTATTTGCTACTTGATTCGAGCATTAATTGAGCGC
AATGGATTTGAAGGTTTAGAGGAAGGACTGAATCTGCTAAAGCAAAATTTAGTTTTGTTTGGCACTGATTTATATCCACA
AAGAAAGCGTGCTCGTGATGGTGCAATGGAATGGTTTGTTGCGCAATTAGAAACAGCACTTCCAAAACTCGATAGTTCGA
CGACTAATTGGGAGAATGTTACTTCATATTTGCAAAAAATTAATGAAATTAGCGATCAATATTATGAAGTATTTCCAGAT
TCTGAAGTTGAATTCTATTTGATCACATCTGTATTAAATGGAATATCACAACGAGTTGTTGGTGCAGGTGAAACAAATAC
AGACACTTCAAGAAATACGGTGTGTGAACCTGAGCCACTTGTAGAAGAAACAACATCGACGGTTACTGAAGTTAAAACAC
CAGTACAAGCAGTTACTCAAGCTCCTAGAACGGTTAATACAGTTAATCAAGAAGTAGATATTGATACGGATTTTACTTCT
CCAAGTGCTTCTAAACGAACCTTAAAAAAGGTTGCTGAGTTTATGTTGCATTCTGATATATCAATGCCATTAGCTTATCG
ATTACACCGTAACTGTACATGGTGCGAAGTGGATGAATTACCTCCACATGATAATGATAAAAAAACACCACTAAGCCTTG
CGGTATCGCAAGATCAGTTAAGCGAATATAGAGATAAAGCCAAACAAGAAACAGAAGCAGAGGTGATTAAGCGTTTAGAA
AGAACGTTAACCGATGCACCATTTTGGTTAACTGGCCACTATTTGATGTTTCAAATGCTTACTAATTTGGATCATCACGA
AGCAGCAGAAGCAGTTAAACAAGAGACTCAGCACTTTATTTCTCAACTTGAGGGCATTGAATTATTAACTTTTGCCAATT
CAATACCATTTGCTGATGAAGATACATTGAAATGGCTTTCTTCGAACACAGCGAGTGTACCCGTAGCCGTTGCTTCTGTA
TCTGTTGACTACACAGAAGACGATAGCTTAGTTGAGGGTGAAGTAACGTTAGAAAATTTAGGGGAGTACGTATCACGTAT
TGCTCAAAACTTGGCTAGTGATCCATCAGGACGAGGCCAATGGATGCTCCATTATAAATTAGTTAAGGCGTACCGCTTTG
TTGGCTTATTACCTCTTTGTTTACCATATATTGAAAAAATGTGGTCGATTAAGGAAGAAATAAATCTTAGCAATTGGGAA
CCTCATTTATGTAATCAGCTTGACTTGTTGGTGAACGAAGTCTTATCAGAAATGTATCCCATAAAAGAGCACATGCCTGA
AAAGTACCAACAGTGGCTATCAATTAATAATACCAACTAG