SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP015891
Component protein type	TssB
T6SS ID (Type)	T6SS01278 (Type i1)
Strain	Aliivibrio fischeri strain FQ-A001
Replicon	chromosome
Sequence	Protein sequence (170 a.a.); Nucleotide sequence (510 bp)
Reference	[1] Guckes KR, Cecere AG, Wasilko NP, et al. Incompatibility of Vibrio fischeri Strains during Symbiosis Establishment Depends on Two Functionally Redundant hcp Genes. J Bacteriol. 2019 Sep 6;201(19). pii: e00221-19. doi: 10.1128/JB.00221-19. Print 2019 Oct 1. PMID: 31331977 [2] Speare L, Cecere AG, Guckes KR, et al. Bacterial symbionts use a type VI secretion system to eliminate competitors in their natural host. Proc Natl Acad Sci U S A. 2018 Sep 4;115(36):E8528-E8537. doi: 10.1073/pnas.1808302115. Epub 2018 Aug 20. PMID: 30127013

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	VFFQA001_RS15565
Coordinate (Strand)	344236..344745 (-)
NCBI ID	WP_012535409.1
RefSeq	NZ_SJSX01000004
Uniprot ID	B5EUK4_ALIFM, A0A1B9P6L9_ALIFS
KEGG ID	vfm:VFMJ11_A0823
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_VipA	PF05591.14	9.3e-59	6..157

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-169	MSRDGSVAPKERINIRYVPATGDVQEDVELPLSMMVVGDFTARTDETPIEDRTPINIDKDNFNDVMEGYSPNVKVNVDNKLSDEEGAQLGVDLTFNSMKDFSPEAIAKSVPELNGLLELREALVALKGPLGNVPAFRKKIAAVLQDEEARQKLLEELNIGSAKEEAKAE

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9879	-	-

Protein sequence: 170 a.a.

						>T6CP015891 NZ_SJSX01000004:c344745-344236 [Aliivibrio fischeri] [TssB]
MSRDGSVAPKERINIRYVPATGDVQEDVELPLSMMVVGDFTARTDETPIEDRTPINIDKDNFNDVMEGYSPNVKVNVDNK
LSDEEGAQLGVDLTFNSMKDFSPEAIAKSVPELNGLLELREALVALKGPLGNVPAFRKKIAAVLQDEEARQKLLEELNIG
SAKEEAKAE*					

Nucleotide sequence: 510 bp

						>T6CP015891 NZ_SJSX01000004:c344745-344236 [Aliivibrio fischeri] [TssB]
ATGTCACGCGATGGCTCGGTTGCTCCTAAAGAGCGAATTAATATCCGTTATGTTCCTGCAACAGGGGATGTACAAGAAGA
CGTTGAACTACCATTAAGTATGATGGTTGTTGGTGATTTTACAGCTCGTACTGATGAGACTCCAATTGAAGACCGTACTC
CTATTAATATCGATAAAGATAACTTTAATGATGTTATGGAAGGTTATTCTCCGAACGTTAAAGTGAATGTCGATAACAAA
CTTAGCGATGAAGAAGGCGCACAGTTAGGCGTTGATTTAACGTTTAACAGCATGAAAGATTTTTCGCCAGAAGCTATCGC
AAAAAGTGTACCAGAGCTGAATGGTCTACTTGAATTACGTGAAGCGTTAGTTGCTTTAAAAGGTCCATTAGGTAACGTTC
CTGCATTCCGTAAAAAGATTGCAGCAGTACTTCAAGATGAAGAAGCACGACAAAAATTATTAGAAGAGCTAAATATTGGT
TCGGCTAAAGAAGAAGCTAAGGCTGAATAG					