Detailed information of component protein
Summary
External database links
Locus tag (Gene) | VFFQA001_RS15560 |
Coordinate (Strand) | 342749..344227 (-) |
NCBI ID | 1027711029 |
RefSeq | NZ_SJSX01000004 |
Uniprot ID | UPI0007C45ADB |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
VipB | PF05943.14 | 8.5e-126 | 68..365 |
VipB_2 | PF18945.2 | 1.1e-44 | 378..489 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-492 | MTAEAQAPEQEAALVESGSLLDSILNETRLKPSDEGFDVAKRGVEAFIGELLSTNTSDKVDQSLVDLMISEIDQKLSKQVDAILHNKEVQAIESTWRGLKYLVDHTDFRENIQIELISAKKDEVLDDFEDAPEVVKSGLYKQIYTREYGQFGGKPVGAVICDFQMSASSPDIKLMEYMANVGAMSHAPFITSASAKFFGLDSYEELPNLKDLKSVFEGPQYTKWRGFREHEDARYVGLCTSRMMLRTPYSVEDNPIKAFDYNEHVKDGHDNYLWGNSAYAMASKISESFAKYRWCPNIIGPQSGGTVSDLPVYNYESMGQIETKIPTEILISDRREYELAEEGFIALTMRKGSDNAAFFSANSVQKAKVFPNTPEGQQAEMNYKLGIQLPYMFIINRLAHYIKVLQREQIGSWKERSDLEIELNKWIRQYVSDQENPPAEVRGRRPLRAAKVEVSEVEGDPGWYKVSMSVRPHFKYMGASFDLSLVGKLDQN |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9889 | - | - |
Protein sequence: 493 a.a.
>T6CP015890 NZ_SJSX01000004:c344227-342749 [Aliivibrio fischeri] [TssC]
MTAEAQAPEQEAALVESGSLLDSILNETRLKPSDEGFDVAKRGVEAFIGELLSTNTSDKVDQSLVDLMISEIDQKLSKQV
DAILHNKEVQAIESTWRGLKYLVDHTDFRENIQIELISAKKDEVLDDFEDAPEVVKSGLYKQIYTREYGQFGGKPVGAVI
CDFQMSASSPDIKLMEYMANVGAMSHAPFITSASAKFFGLDSYEELPNLKDLKSVFEGPQYTKWRGFREHEDARYVGLCT
SRMMLRTPYSVEDNPIKAFDYNEHVKDGHDNYLWGNSAYAMASKISESFAKYRWCPNIIGPQSGGTVSDLPVYNYESMGQ
IETKIPTEILISDRREYELAEEGFIALTMRKGSDNAAFFSANSVQKAKVFPNTPEGQQAEMNYKLGIQLPYMFIINRLAH
YIKVLQREQIGSWKERSDLEIELNKWIRQYVSDQENPPAEVRGRRPLRAAKVEVSEVEGDPGWYKVSMSVRPHFKYMGAS
FDLSLVGKLDQN*
MTAEAQAPEQEAALVESGSLLDSILNETRLKPSDEGFDVAKRGVEAFIGELLSTNTSDKVDQSLVDLMISEIDQKLSKQV
DAILHNKEVQAIESTWRGLKYLVDHTDFRENIQIELISAKKDEVLDDFEDAPEVVKSGLYKQIYTREYGQFGGKPVGAVI
CDFQMSASSPDIKLMEYMANVGAMSHAPFITSASAKFFGLDSYEELPNLKDLKSVFEGPQYTKWRGFREHEDARYVGLCT
SRMMLRTPYSVEDNPIKAFDYNEHVKDGHDNYLWGNSAYAMASKISESFAKYRWCPNIIGPQSGGTVSDLPVYNYESMGQ
IETKIPTEILISDRREYELAEEGFIALTMRKGSDNAAFFSANSVQKAKVFPNTPEGQQAEMNYKLGIQLPYMFIINRLAH
YIKVLQREQIGSWKERSDLEIELNKWIRQYVSDQENPPAEVRGRRPLRAAKVEVSEVEGDPGWYKVSMSVRPHFKYMGAS
FDLSLVGKLDQN*
Nucleotide sequence: 1479 bp
>T6CP015890 NZ_SJSX01000004:c344227-342749 [Aliivibrio fischeri] [TssC]
ATGACAGCAGAAGCACAAGCTCCAGAGCAAGAAGCAGCACTCGTTGAGTCTGGTTCATTACTAGATAGTATTCTTAATGA
AACTCGTTTAAAACCAAGTGATGAAGGTTTTGATGTCGCTAAGCGCGGCGTAGAAGCGTTTATTGGTGAGTTACTAAGTA
CAAATACATCAGATAAAGTTGATCAGTCGCTAGTTGATTTGATGATTTCTGAAATCGATCAGAAACTATCAAAACAAGTT
GATGCAATTTTGCATAACAAAGAAGTACAAGCTATTGAATCAACATGGCGTGGTCTAAAGTACTTGGTCGATCATACTGA
CTTCCGTGAAAACATTCAGATTGAATTGATTTCAGCGAAGAAAGACGAAGTATTAGATGATTTTGAAGATGCTCCAGAAG
TTGTTAAATCGGGCCTTTATAAGCAAATTTATACTCGTGAATACGGTCAATTTGGTGGTAAACCTGTTGGCGCGGTTATC
TGTGATTTCCAAATGTCAGCGTCATCTCCTGATATTAAACTAATGGAATACATGGCTAATGTTGGTGCAATGTCACATGC
CCCATTTATTACATCAGCGTCGGCTAAATTCTTTGGGCTAGATAGCTATGAAGAATTACCAAATTTAAAAGATCTTAAGT
CAGTATTTGAAGGTCCACAATACACGAAATGGCGTGGGTTCCGTGAACATGAAGATGCACGTTATGTTGGTCTTTGTACT
TCACGTATGATGCTTCGTACTCCTTACTCAGTAGAAGATAATCCAATCAAAGCATTTGATTATAATGAACACGTAAAAGA
TGGCCATGATAACTACTTATGGGGTAACTCAGCTTACGCAATGGCATCTAAGATCAGTGAATCTTTTGCTAAGTATCGTT
GGTGTCCAAATATCATTGGTCCACAAAGTGGTGGTACAGTATCTGATCTTCCAGTATATAATTACGAGTCAATGGGACAA
ATTGAAACTAAGATCCCAACAGAGATTTTAATTTCTGATCGTCGTGAATACGAGTTAGCAGAAGAGGGCTTTATTGCGCT
TACTATGCGTAAAGGTTCTGATAATGCAGCATTCTTCTCTGCAAACTCGGTACAAAAAGCAAAAGTATTCCCGAATACGC
CAGAAGGTCAGCAAGCTGAAATGAACTACAAATTAGGTATTCAATTACCTTATATGTTCATTATTAACCGTTTAGCACAT
TACATTAAAGTACTTCAACGTGAACAGATTGGTTCATGGAAAGAGCGTTCTGACTTAGAAATCGAGCTAAACAAATGGAT
CCGTCAATACGTTTCTGATCAAGAGAATCCACCAGCAGAAGTACGTGGTCGCCGACCTTTACGTGCTGCAAAAGTCGAAG
TATCTGAAGTTGAAGGCGATCCAGGTTGGTACAAAGTATCAATGTCAGTTCGTCCACACTTTAAGTACATGGGTGCAAGT
TTTGATTTATCTTTAGTTGGAAAATTAGATCAAAACTAA
ATGACAGCAGAAGCACAAGCTCCAGAGCAAGAAGCAGCACTCGTTGAGTCTGGTTCATTACTAGATAGTATTCTTAATGA
AACTCGTTTAAAACCAAGTGATGAAGGTTTTGATGTCGCTAAGCGCGGCGTAGAAGCGTTTATTGGTGAGTTACTAAGTA
CAAATACATCAGATAAAGTTGATCAGTCGCTAGTTGATTTGATGATTTCTGAAATCGATCAGAAACTATCAAAACAAGTT
GATGCAATTTTGCATAACAAAGAAGTACAAGCTATTGAATCAACATGGCGTGGTCTAAAGTACTTGGTCGATCATACTGA
CTTCCGTGAAAACATTCAGATTGAATTGATTTCAGCGAAGAAAGACGAAGTATTAGATGATTTTGAAGATGCTCCAGAAG
TTGTTAAATCGGGCCTTTATAAGCAAATTTATACTCGTGAATACGGTCAATTTGGTGGTAAACCTGTTGGCGCGGTTATC
TGTGATTTCCAAATGTCAGCGTCATCTCCTGATATTAAACTAATGGAATACATGGCTAATGTTGGTGCAATGTCACATGC
CCCATTTATTACATCAGCGTCGGCTAAATTCTTTGGGCTAGATAGCTATGAAGAATTACCAAATTTAAAAGATCTTAAGT
CAGTATTTGAAGGTCCACAATACACGAAATGGCGTGGGTTCCGTGAACATGAAGATGCACGTTATGTTGGTCTTTGTACT
TCACGTATGATGCTTCGTACTCCTTACTCAGTAGAAGATAATCCAATCAAAGCATTTGATTATAATGAACACGTAAAAGA
TGGCCATGATAACTACTTATGGGGTAACTCAGCTTACGCAATGGCATCTAAGATCAGTGAATCTTTTGCTAAGTATCGTT
GGTGTCCAAATATCATTGGTCCACAAAGTGGTGGTACAGTATCTGATCTTCCAGTATATAATTACGAGTCAATGGGACAA
ATTGAAACTAAGATCCCAACAGAGATTTTAATTTCTGATCGTCGTGAATACGAGTTAGCAGAAGAGGGCTTTATTGCGCT
TACTATGCGTAAAGGTTCTGATAATGCAGCATTCTTCTCTGCAAACTCGGTACAAAAAGCAAAAGTATTCCCGAATACGC
CAGAAGGTCAGCAAGCTGAAATGAACTACAAATTAGGTATTCAATTACCTTATATGTTCATTATTAACCGTTTAGCACAT
TACATTAAAGTACTTCAACGTGAACAGATTGGTTCATGGAAAGAGCGTTCTGACTTAGAAATCGAGCTAAACAAATGGAT
CCGTCAATACGTTTCTGATCAAGAGAATCCACCAGCAGAAGTACGTGGTCGCCGACCTTTACGTGCTGCAAAAGTCGAAG
TATCTGAAGTTGAAGGCGATCCAGGTTGGTACAAAGTATCAATGTCAGTTCGTCCACACTTTAAGTACATGGGTGCAAGT
TTTGATTTATCTTTAGTTGGAAAATTAGATCAAAACTAA