Detailed information of component protein


Summary

Component ID T6CP015890
Component protein type TssC
T6SS ID (Type) T6SS01278 experimental (Type i1)
Strain Aliivibrio fischeri strain FQ-A001
Replicon chromosome
Sequence Protein sequence (493 a.a.); Nucleotide sequence (1479 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFFQA001_RS15560
Coordinate (Strand) 342749..344227 (-)
NCBI ID 1027711029
RefSeq NZ_SJSX01000004
Uniprot ID UPI0007C45ADB
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 8.5e-126 68..365
VipB_2 PF18945.2 1.1e-44 378..489
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-492 MTAEAQAPEQEAALVESGSLLDSILNETRLKPSDEGFDVAKRGVEAFIGELLSTNTSDKVDQSLVDLMISEIDQKLSKQVDAILHNKEVQAIESTWRGLKYLVDHTDFRENIQIELISAKKDEVLDDFEDAPEVVKSGLYKQIYTREYGQFGGKPVGAVICDFQMSASSPDIKLMEYMANVGAMSHAPFITSASAKFFGLDSYEELPNLKDLKSVFEGPQYTKWRGFREHEDARYVGLCTSRMMLRTPYSVEDNPIKAFDYNEHVKDGHDNYLWGNSAYAMASKISESFAKYRWCPNIIGPQSGGTVSDLPVYNYESMGQIETKIPTEILISDRREYELAEEGFIALTMRKGSDNAAFFSANSVQKAKVFPNTPEGQQAEMNYKLGIQLPYMFIINRLAHYIKVLQREQIGSWKERSDLEIELNKWIRQYVSDQENPPAEVRGRRPLRAAKVEVSEVEGDPGWYKVSMSVRPHFKYMGASFDLSLVGKLDQN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9889 - -


  Protein sequence: 493 a.a.    

>T6CP015890 NZ_SJSX01000004:c344227-342749 [Aliivibrio fischeri] [TssC]
MTAEAQAPEQEAALVESGSLLDSILNETRLKPSDEGFDVAKRGVEAFIGELLSTNTSDKVDQSLVDLMISEIDQKLSKQV
DAILHNKEVQAIESTWRGLKYLVDHTDFRENIQIELISAKKDEVLDDFEDAPEVVKSGLYKQIYTREYGQFGGKPVGAVI
CDFQMSASSPDIKLMEYMANVGAMSHAPFITSASAKFFGLDSYEELPNLKDLKSVFEGPQYTKWRGFREHEDARYVGLCT
SRMMLRTPYSVEDNPIKAFDYNEHVKDGHDNYLWGNSAYAMASKISESFAKYRWCPNIIGPQSGGTVSDLPVYNYESMGQ
IETKIPTEILISDRREYELAEEGFIALTMRKGSDNAAFFSANSVQKAKVFPNTPEGQQAEMNYKLGIQLPYMFIINRLAH
YIKVLQREQIGSWKERSDLEIELNKWIRQYVSDQENPPAEVRGRRPLRAAKVEVSEVEGDPGWYKVSMSVRPHFKYMGAS
FDLSLVGKLDQN*

  Nucleotide sequence: 1479 bp    

>T6CP015890 NZ_SJSX01000004:c344227-342749 [Aliivibrio fischeri] [TssC]
ATGACAGCAGAAGCACAAGCTCCAGAGCAAGAAGCAGCACTCGTTGAGTCTGGTTCATTACTAGATAGTATTCTTAATGA
AACTCGTTTAAAACCAAGTGATGAAGGTTTTGATGTCGCTAAGCGCGGCGTAGAAGCGTTTATTGGTGAGTTACTAAGTA
CAAATACATCAGATAAAGTTGATCAGTCGCTAGTTGATTTGATGATTTCTGAAATCGATCAGAAACTATCAAAACAAGTT
GATGCAATTTTGCATAACAAAGAAGTACAAGCTATTGAATCAACATGGCGTGGTCTAAAGTACTTGGTCGATCATACTGA
CTTCCGTGAAAACATTCAGATTGAATTGATTTCAGCGAAGAAAGACGAAGTATTAGATGATTTTGAAGATGCTCCAGAAG
TTGTTAAATCGGGCCTTTATAAGCAAATTTATACTCGTGAATACGGTCAATTTGGTGGTAAACCTGTTGGCGCGGTTATC
TGTGATTTCCAAATGTCAGCGTCATCTCCTGATATTAAACTAATGGAATACATGGCTAATGTTGGTGCAATGTCACATGC
CCCATTTATTACATCAGCGTCGGCTAAATTCTTTGGGCTAGATAGCTATGAAGAATTACCAAATTTAAAAGATCTTAAGT
CAGTATTTGAAGGTCCACAATACACGAAATGGCGTGGGTTCCGTGAACATGAAGATGCACGTTATGTTGGTCTTTGTACT
TCACGTATGATGCTTCGTACTCCTTACTCAGTAGAAGATAATCCAATCAAAGCATTTGATTATAATGAACACGTAAAAGA
TGGCCATGATAACTACTTATGGGGTAACTCAGCTTACGCAATGGCATCTAAGATCAGTGAATCTTTTGCTAAGTATCGTT
GGTGTCCAAATATCATTGGTCCACAAAGTGGTGGTACAGTATCTGATCTTCCAGTATATAATTACGAGTCAATGGGACAA
ATTGAAACTAAGATCCCAACAGAGATTTTAATTTCTGATCGTCGTGAATACGAGTTAGCAGAAGAGGGCTTTATTGCGCT
TACTATGCGTAAAGGTTCTGATAATGCAGCATTCTTCTCTGCAAACTCGGTACAAAAAGCAAAAGTATTCCCGAATACGC
CAGAAGGTCAGCAAGCTGAAATGAACTACAAATTAGGTATTCAATTACCTTATATGTTCATTATTAACCGTTTAGCACAT
TACATTAAAGTACTTCAACGTGAACAGATTGGTTCATGGAAAGAGCGTTCTGACTTAGAAATCGAGCTAAACAAATGGAT
CCGTCAATACGTTTCTGATCAAGAGAATCCACCAGCAGAAGTACGTGGTCGCCGACCTTTACGTGCTGCAAAAGTCGAAG
TATCTGAAGTTGAAGGCGATCCAGGTTGGTACAAAGTATCAATGTCAGTTCGTCCACACTTTAAGTACATGGGTGCAAGT
TTTGATTTATCTTTAGTTGGAAAATTAGATCAAAACTAA