Detailed information of component protein
Summary
External database links
Locus tag (Gene) | VFFQA001_RS15545 |
Coordinate (Strand) | 339523..340521 (-) |
NCBI ID | 1027713318 |
RefSeq | NZ_SJSX01000004 |
Uniprot ID | UPI0007C5310C |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_TssG | PF06996.13 | 2.1e-85 | 9..317 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-332 | MIQYIVNKPCDYSFFQAVSLLEKHYQNLPGIEYKAIGENQYVKNEYIQFSVSPKLSFPKSDIEFISEFERNDAVYTQIEVNFMGLHGVSSPLPASYTEKLAGRDPDDNPVKEFFDFFHHRYISMLYRVWKKYRYHIQYKSDAKDPFSGRLLHLVGLSSVIQESSEVDLDRAKLLSYVNQLSTRTRSPKLVSGIVSHYFSLSNVYIEEWVYRRITIAASQRNCLNRKNCQLGGDFHLGQSMADLTGKFNLCIDDIDFDTYVKFLPGGALHETLIGLMKFILCDPMAWDLKLTVRNKSLPINQLGDGLGNELGQTFWLGTTKGEETKIKIVGSN |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9955 | - | - |
Protein sequence: 333 a.a.
>T6CP015887 NZ_SJSX01000004:c340521-339523 [Aliivibrio fischeri] [TssG]
MIQYIVNKPCDYSFFQAVSLLEKHYQNLPGIEYKAIGENQYVKNEYIQFSVSPKLSFPKSDIEFISEFERNDAVYTQIEV
NFMGLHGVSSPLPASYTEKLAGRDPDDNPVKEFFDFFHHRYISMLYRVWKKYRYHIQYKSDAKDPFSGRLLHLVGLSSVI
QESSEVDLDRAKLLSYVNQLSTRTRSPKLVSGIVSHYFSLSNVYIEEWVYRRITIAASQRNCLNRKNCQLGGDFHLGQSM
ADLTGKFNLCIDDIDFDTYVKFLPGGALHETLIGLMKFILCDPMAWDLKLTVRNKSLPINQLGDGLGNELGQTFWLGTTK
GEETKIKIVGSN*
MIQYIVNKPCDYSFFQAVSLLEKHYQNLPGIEYKAIGENQYVKNEYIQFSVSPKLSFPKSDIEFISEFERNDAVYTQIEV
NFMGLHGVSSPLPASYTEKLAGRDPDDNPVKEFFDFFHHRYISMLYRVWKKYRYHIQYKSDAKDPFSGRLLHLVGLSSVI
QESSEVDLDRAKLLSYVNQLSTRTRSPKLVSGIVSHYFSLSNVYIEEWVYRRITIAASQRNCLNRKNCQLGGDFHLGQSM
ADLTGKFNLCIDDIDFDTYVKFLPGGALHETLIGLMKFILCDPMAWDLKLTVRNKSLPINQLGDGLGNELGQTFWLGTTK
GEETKIKIVGSN*
Nucleotide sequence: 999 bp
>T6CP015887 NZ_SJSX01000004:c340521-339523 [Aliivibrio fischeri] [TssG]
ATGATTCAATATATTGTTAACAAACCATGCGATTATAGTTTCTTTCAAGCGGTGTCTTTACTTGAAAAACACTATCAAAA
TTTACCTGGTATTGAATATAAAGCTATTGGTGAGAACCAATACGTAAAGAATGAGTACATTCAATTTAGCGTATCTCCAA
AACTTAGCTTCCCTAAAAGTGATATAGAATTTATTTCTGAATTTGAACGTAACGATGCTGTCTATACACAAATAGAAGTT
AACTTTATGGGACTTCACGGTGTAAGTTCACCATTACCAGCTTCGTATACGGAAAAATTAGCAGGAAGAGATCCTGATGA
TAACCCTGTAAAAGAGTTTTTTGATTTTTTCCATCACAGATACATCAGTATGCTTTATCGAGTATGGAAAAAATATCGGT
ATCATATTCAATATAAGAGTGATGCTAAGGATCCGTTCTCAGGTAGGTTATTACATTTAGTTGGATTATCTAGCGTAATT
CAAGAAAGTAGTGAGGTCGATTTAGACAGAGCGAAATTACTTTCCTATGTTAATCAACTTTCGACGCGTACACGTTCACC
AAAACTTGTTTCTGGTATCGTTTCCCATTACTTTTCGCTTTCAAATGTATACATAGAAGAATGGGTATACAGACGAATTA
CTATTGCGGCTTCTCAACGTAATTGTCTTAATCGAAAGAATTGTCAATTGGGTGGTGACTTCCATTTAGGACAGAGTATG
GCGGATTTAACCGGAAAGTTTAATCTGTGTATTGATGATATTGATTTCGATACCTATGTGAAATTTTTGCCTGGTGGTGC
GTTACATGAAACGTTAATCGGACTAATGAAGTTTATTTTATGTGATCCGATGGCGTGGGATTTAAAACTAACTGTACGAA
ATAAGTCTTTACCTATAAATCAATTAGGTGATGGCTTAGGAAATGAGCTTGGACAAACATTTTGGTTAGGAACGACAAAA
GGGGAGGAGACGAAAATTAAAATAGTAGGCAGTAACTAA
ATGATTCAATATATTGTTAACAAACCATGCGATTATAGTTTCTTTCAAGCGGTGTCTTTACTTGAAAAACACTATCAAAA
TTTACCTGGTATTGAATATAAAGCTATTGGTGAGAACCAATACGTAAAGAATGAGTACATTCAATTTAGCGTATCTCCAA
AACTTAGCTTCCCTAAAAGTGATATAGAATTTATTTCTGAATTTGAACGTAACGATGCTGTCTATACACAAATAGAAGTT
AACTTTATGGGACTTCACGGTGTAAGTTCACCATTACCAGCTTCGTATACGGAAAAATTAGCAGGAAGAGATCCTGATGA
TAACCCTGTAAAAGAGTTTTTTGATTTTTTCCATCACAGATACATCAGTATGCTTTATCGAGTATGGAAAAAATATCGGT
ATCATATTCAATATAAGAGTGATGCTAAGGATCCGTTCTCAGGTAGGTTATTACATTTAGTTGGATTATCTAGCGTAATT
CAAGAAAGTAGTGAGGTCGATTTAGACAGAGCGAAATTACTTTCCTATGTTAATCAACTTTCGACGCGTACACGTTCACC
AAAACTTGTTTCTGGTATCGTTTCCCATTACTTTTCGCTTTCAAATGTATACATAGAAGAATGGGTATACAGACGAATTA
CTATTGCGGCTTCTCAACGTAATTGTCTTAATCGAAAGAATTGTCAATTGGGTGGTGACTTCCATTTAGGACAGAGTATG
GCGGATTTAACCGGAAAGTTTAATCTGTGTATTGATGATATTGATTTCGATACCTATGTGAAATTTTTGCCTGGTGGTGC
GTTACATGAAACGTTAATCGGACTAATGAAGTTTATTTTATGTGATCCGATGGCGTGGGATTTAAAACTAACTGTACGAA
ATAAGTCTTTACCTATAAATCAATTAGGTGATGGCTTAGGAAATGAGCTTGGACAAACATTTTGGTTAGGAACGACAAAA
GGGGAGGAGACGAAAATTAAAATAGTAGGCAGTAACTAA