Detailed information of component protein
Summary
External database links
Locus tag (Gene) | VFFQA001_RS15485 |
Coordinate (Strand) | 318668..319459 (+) |
NCBI ID | 1597593399 |
RefSeq | NZ_SJSX01000004 |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
DotU | PF09850.11 | 2.3e-49 | 47..247 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Inside | 1-230 | MSYVEDDVTVVLFQPEPGKPMEVMPAPDLSRNISVSELDISSMGINPLVDQFSWLIASLSCMSSIPWLDDPMPFREQVAREIRKGERMLNEMEVDRASILVIRYCLCAAMDESVCRQEWGANSNWSQNSLLSEFHNETSGGDKFFVILDRLKADPRKYRHVIEFLYLLLQLGFKGKYGRAERGAESLTDIGNTIYRLVRDERLAEQEKVALVDVKSKYLKKPLKRVLPPK |
Transmembrane helix | 231-253 | LILGVSALLFAAMYAATYLVIDV |
Outside | 254-263 | RFQKLLSLYQ |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9938 | - | - |
Protein sequence: 264 a.a.
>T6CP015885 NZ_SJSX01000004:318668-319459 [Aliivibrio fischeri] [TssL]
MSYVEDDVTVVLFQPEPGKPMEVMPAPDLSRNISVSELDISSMGINPLVDQFSWLIASLSCMSSIPWLDDPMPFREQVAR
EIRKGERMLNEMEVDRASILVIRYCLCAAMDESVCRQEWGANSNWSQNSLLSEFHNETSGGDKFFVILDRLKADPRKYRH
VIEFLYLLLQLGFKGKYGRAERGAESLTDIGNTIYRLVRDERLAEQEKVALVDVKSKYLKKPLKRVLPPKLILGVSALLF
AAMYAATYLVIDVRFQKLLSLYQ*
MSYVEDDVTVVLFQPEPGKPMEVMPAPDLSRNISVSELDISSMGINPLVDQFSWLIASLSCMSSIPWLDDPMPFREQVAR
EIRKGERMLNEMEVDRASILVIRYCLCAAMDESVCRQEWGANSNWSQNSLLSEFHNETSGGDKFFVILDRLKADPRKYRH
VIEFLYLLLQLGFKGKYGRAERGAESLTDIGNTIYRLVRDERLAEQEKVALVDVKSKYLKKPLKRVLPPKLILGVSALLF
AAMYAATYLVIDVRFQKLLSLYQ*
Nucleotide sequence: 792 bp
>T6CP015885 NZ_SJSX01000004:318668-319459 [Aliivibrio fischeri] [TssL]
ATGAGTTATGTTGAAGACGACGTAACAGTTGTACTTTTTCAACCTGAACCGGGCAAACCCATGGAGGTTATGCCCGCCCC
TGATTTATCTCGCAATATTTCAGTCAGTGAATTGGATATTTCATCTATGGGGATCAATCCATTAGTTGACCAATTCTCAT
GGCTTATTGCGAGTTTATCTTGTATGTCTTCCATTCCATGGCTTGATGATCCTATGCCTTTTCGTGAGCAAGTAGCTCGT
GAAATACGTAAAGGTGAACGTATGCTCAACGAAATGGAAGTCGACCGTGCATCTATTCTGGTTATCCGTTATTGCTTATG
TGCTGCAATGGATGAATCGGTATGCCGCCAAGAATGGGGAGCCAACAGTAACTGGAGCCAGAACAGCTTATTGTCTGAAT
TTCATAATGAAACCTCAGGTGGCGATAAGTTTTTTGTCATTTTAGATAGATTAAAAGCAGACCCTCGCAAGTATCGCCAT
GTGATTGAATTCCTATATTTACTCCTACAACTTGGTTTTAAAGGTAAATATGGTCGAGCTGAGCGTGGTGCCGAAAGTTT
GACAGATATCGGCAACACTATCTACCGTTTGGTTCGTGACGAGCGTCTTGCTGAACAAGAGAAAGTAGCATTAGTTGATG
TCAAATCTAAGTACTTAAAAAAACCATTAAAACGCGTACTGCCTCCAAAGTTGATCCTTGGCGTCAGTGCTTTACTATTT
GCGGCCATGTATGCCGCTACGTATCTCGTTATTGATGTTCGATTTCAAAAGTTACTGTCTCTTTATCAGTAG
ATGAGTTATGTTGAAGACGACGTAACAGTTGTACTTTTTCAACCTGAACCGGGCAAACCCATGGAGGTTATGCCCGCCCC
TGATTTATCTCGCAATATTTCAGTCAGTGAATTGGATATTTCATCTATGGGGATCAATCCATTAGTTGACCAATTCTCAT
GGCTTATTGCGAGTTTATCTTGTATGTCTTCCATTCCATGGCTTGATGATCCTATGCCTTTTCGTGAGCAAGTAGCTCGT
GAAATACGTAAAGGTGAACGTATGCTCAACGAAATGGAAGTCGACCGTGCATCTATTCTGGTTATCCGTTATTGCTTATG
TGCTGCAATGGATGAATCGGTATGCCGCCAAGAATGGGGAGCCAACAGTAACTGGAGCCAGAACAGCTTATTGTCTGAAT
TTCATAATGAAACCTCAGGTGGCGATAAGTTTTTTGTCATTTTAGATAGATTAAAAGCAGACCCTCGCAAGTATCGCCAT
GTGATTGAATTCCTATATTTACTCCTACAACTTGGTTTTAAAGGTAAATATGGTCGAGCTGAGCGTGGTGCCGAAAGTTT
GACAGATATCGGCAACACTATCTACCGTTTGGTTCGTGACGAGCGTCTTGCTGAACAAGAGAAAGTAGCATTAGTTGATG
TCAAATCTAAGTACTTAAAAAAACCATTAAAACGCGTACTGCCTCCAAAGTTGATCCTTGGCGTCAGTGCTTTACTATTT
GCGGCCATGTATGCCGCTACGTATCTCGTTATTGATGTTCGATTTCAAAAGTTACTGTCTCTTTATCAGTAG