Detailed information of component protein


Summary

Component ID T6CP015884
Component protein type TssK
T6SS ID (Type) T6SS01278 experimental (Type i1)
Strain Aliivibrio fischeri strain FQ-A001
Replicon chromosome
Sequence Protein sequence (442 a.a.); Nucleotide sequence (1326 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFFQA001_RS15480
Coordinate (Strand) 317346..318671 (+)
NCBI ID 1597593398
RefSeq NZ_SJSX01000004
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 3.2e-136 19..439
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-441 MSLYNPVVWQDGMFMKPQHFQQLDRFQGKQSGMLSGFESPLHWGIKRIEINTELLALGKIGITHAEGILQDRTPFDLPLHASLPEVKDVDASVANKVLYLCCPLPSERSELFGTSKDGARYSIHTQDAVDACYDSEEIANITIGKLNFCLMYEDEDKSAYTSIPILKISEVKPDGSIILDNAYIPTCIDINASTVLKKFTTEFASMLRHRAESIVQRLGVVDQQGVSSVSDFMLLQALNRYEPLFWHFANIEGVHPEAFYRVLLQAEGELATLCSSSRRPQEFVPYNHGNLTSCLSTILHNSKVTLSVMSEQRAIPLPLKEQGYGIRIAPISDRSIVESTTFILAVKADVTLDILHTQFVSQTKIGSIDNIRELINLQLPGINIKPMPVVPRALPYHAGYTYFELDKSSEEWTALNKAAAIAVHVAGDFANLSLQLWAVRL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9976 - -


  Protein sequence: 442 a.a.    

>T6CP015884 NZ_SJSX01000004:317346-318671 [Aliivibrio fischeri] [TssK]
MSLYNPVVWQDGMFMKPQHFQQLDRFQGKQSGMLSGFESPLHWGIKRIEINTELLALGKIGITHAEGILQDRTPFDLPLH
ASLPEVKDVDASVANKVLYLCCPLPSERSELFGTSKDGARYSIHTQDAVDACYDSEEIANITIGKLNFCLMYEDEDKSAY
TSIPILKISEVKPDGSIILDNAYIPTCIDINASTVLKKFTTEFASMLRHRAESIVQRLGVVDQQGVSSVSDFMLLQALNR
YEPLFWHFANIEGVHPEAFYRVLLQAEGELATLCSSSRRPQEFVPYNHGNLTSCLSTILHNSKVTLSVMSEQRAIPLPLK
EQGYGIRIAPISDRSIVESTTFILAVKADVTLDILHTQFVSQTKIGSIDNIRELINLQLPGINIKPMPVVPRALPYHAGY
TYFELDKSSEEWTALNKAAAIAVHVAGDFANLSLQLWAVRL*

  Nucleotide sequence: 1326 bp    

>T6CP015884 NZ_SJSX01000004:317346-318671 [Aliivibrio fischeri] [TssK]
ATGTCATTATATAACCCTGTCGTTTGGCAAGATGGAATGTTCATGAAACCGCAACATTTCCAGCAACTAGATCGCTTTCA
AGGTAAACAAAGTGGAATGCTAAGTGGGTTTGAATCACCTCTTCACTGGGGCATAAAACGCATTGAAATTAATACCGAGT
TACTGGCTTTAGGAAAAATTGGTATCACACACGCAGAAGGTATTTTACAAGATAGAACCCCTTTTGATTTGCCACTGCAC
GCCTCTTTACCAGAGGTAAAAGATGTCGATGCATCCGTTGCGAATAAAGTGCTGTACCTATGTTGTCCATTGCCTTCTGA
ACGTTCAGAATTATTTGGTACAAGTAAAGATGGTGCTCGCTATTCTATACACACACAGGATGCAGTAGACGCGTGTTATG
ACAGTGAAGAAATTGCCAATATTACCATTGGTAAACTGAATTTTTGTTTAATGTATGAAGATGAAGATAAGAGTGCTTAC
ACCTCTATTCCAATCTTAAAAATTTCAGAAGTAAAACCAGATGGCAGTATTATTCTTGATAATGCTTACATTCCTACATG
TATTGATATAAACGCATCTACGGTATTAAAGAAATTTACTACTGAATTTGCCTCTATGCTTCGTCATCGTGCTGAATCCA
TTGTGCAGCGCTTAGGTGTTGTTGATCAGCAAGGTGTTTCATCGGTGTCTGATTTCATGCTACTTCAAGCATTAAACCGT
TACGAACCTTTATTCTGGCACTTTGCCAACATTGAAGGTGTACACCCTGAAGCGTTTTATCGTGTTTTATTGCAAGCAGA
AGGGGAATTAGCAACCCTATGTTCGTCGTCACGCCGACCACAAGAGTTCGTTCCTTATAATCACGGTAATTTAACGAGTT
GTTTATCAACCATCTTACATAACTCAAAAGTGACCTTAAGCGTAATGTCAGAACAACGCGCTATTCCTCTTCCTCTTAAA
GAGCAAGGTTATGGTATTCGTATTGCGCCAATTTCAGACAGAAGTATTGTTGAATCGACTACCTTTATCTTGGCAGTTAA
AGCTGATGTTACTCTTGATATACTACATACTCAATTTGTATCTCAAACTAAGATTGGCTCTATCGATAACATTCGTGAAC
TTATCAATCTACAACTGCCAGGTATCAATATTAAACCTATGCCGGTGGTTCCTCGTGCATTGCCATATCACGCGGGTTAC
ACCTACTTTGAGTTAGACAAATCAAGCGAAGAATGGACTGCACTAAATAAAGCCGCAGCTATTGCCGTTCATGTTGCTGG
TGATTTTGCAAACTTATCTCTACAGCTTTGGGCCGTTAGACTATGA