Detailed information of component protein


Summary

Component ID T6CP015725
Component protein type TssI
T6SS ID (Type) T6SS01259 experimental (Type Unknown)
Strain Aeromonas hydrophila ML09-119
Replicon chromosome
Sequence Protein sequence (683 a.a.); Nucleotide sequence (2049 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AHML_RS10030
Coordinate (Strand) 2202778..2204826 (+)
NCBI ID 511290181
RefSeq NC_021290
Uniprot ID UPI000332BBDE
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 4.7e-90 30..327
Phage_base_V PF04717.14 1.5e-14 389..456
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-682 MADSTGLQFTVKVGALPESTFVVAEFALDEALNRPFNLRLELASAQPDIDFGAVLDQPCELLVWYNGELQRRVCGVVSDFAQGDSGFRRTRYQLLVQPALWRLSLRQNSRIFQAQKPDEILSILLQEHGITDYAFALRNEHAKREYCVQYRETDLDFVNRLAAEEGMFYFHEFEAGKHRIVFADDAAALTQGPELFFNLGNRSLEQGPYVRQFHYREAVRPSDVELKDYSFKTPAYGLSHKKQGSELEHQRDTYQHFDYPGRYKQDGSGKAFAQHRLDALRNDAVAGQAKSNCAALQPGQSFSLTEHPNGSLNTDWQIVRIQHTGEQPQALEEEGGSGPTVYHNEFGVVKASSTWRARIGSPEAPHKPMVDGPQIAMVVGPDGEEIYCDEHGRVKLQFPWDRYGSSNDQSSCWVRVSQGWAGGQYGMMAIPRIGHEVIVSFLEGDPDQPIVTGRTYHATNRPPYELPANKTRTVLRTETHQGEGFNELRFEDQAGQEEIYIHGQKDLNVLIENDAAWHIKHDQHTDIDNERVTRIKANDHLTVEGEKRDQIKADYSLTVDASLHQKLGQSLLVEAGQEVHIKVGDKLVLEAGSEITLKGGGSFVKVDPSGIKLVGPAIKLNAGGSAGSGSGWAGQPPIIPKGVEVVKAPELVELVKAIATEKAMEALLKEQGPAQTFFVPSR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9890 - -


  Protein sequence: 683 a.a.    

>T6CP015725 NC_021290:2202778-2204826 [Aeromonas hydrophila ML09-119] [TssI]
MADSTGLQFTVKVGALPESTFVVAEFALDEALNRPFNLRLELASAQPDIDFGAVLDQPCELLVWYNGELQRRVCGVVSDF
AQGDSGFRRTRYQLLVQPALWRLSLRQNSRIFQAQKPDEILSILLQEHGITDYAFALRNEHAKREYCVQYRETDLDFVNR
LAAEEGMFYFHEFEAGKHRIVFADDAAALTQGPELFFNLGNRSLEQGPYVRQFHYREAVRPSDVELKDYSFKTPAYGLSH
KKQGSELEHQRDTYQHFDYPGRYKQDGSGKAFAQHRLDALRNDAVAGQAKSNCAALQPGQSFSLTEHPNGSLNTDWQIVR
IQHTGEQPQALEEEGGSGPTVYHNEFGVVKASSTWRARIGSPEAPHKPMVDGPQIAMVVGPDGEEIYCDEHGRVKLQFPW
DRYGSSNDQSSCWVRVSQGWAGGQYGMMAIPRIGHEVIVSFLEGDPDQPIVTGRTYHATNRPPYELPANKTRTVLRTETH
QGEGFNELRFEDQAGQEEIYIHGQKDLNVLIENDAAWHIKHDQHTDIDNERVTRIKANDHLTVEGEKRDQIKADYSLTVD
ASLHQKLGQSLLVEAGQEVHIKVGDKLVLEAGSEITLKGGGSFVKVDPSGIKLVGPAIKLNAGGSAGSGSGWAGQPPIIP
KGVEVVKAPELVELVKAIATEKAMEALLKEQGPAQTFFVPSR*

  Nucleotide sequence: 2049 bp    

>T6CP015725 NC_021290:2202778-2204826 [Aeromonas hydrophila ML09-119] [TssI]
ATGGCAGACAGCACAGGATTACAATTTACCGTCAAGGTGGGGGCTCTGCCCGAGAGTACTTTCGTGGTGGCCGAGTTTGC
GCTGGATGAAGCGCTCAACCGGCCGTTCAACCTGCGCCTGGAGCTGGCGAGTGCCCAGCCCGACATCGACTTTGGCGCCG
TGCTGGACCAGCCGTGCGAGCTGCTGGTGTGGTACAACGGCGAGCTGCAGCGCCGGGTGTGCGGGGTGGTCAGTGACTTC
GCGCAGGGTGACAGCGGCTTTCGCCGCACCCGCTATCAGCTGCTGGTGCAGCCGGCCCTGTGGCGGCTGTCGCTTCGCCA
GAACTCCCGCATCTTCCAGGCACAAAAGCCCGATGAAATCCTCAGTATCCTGTTGCAAGAGCACGGCATCACCGACTACG
CCTTCGCCCTGAGAAACGAGCACGCCAAGCGGGAATACTGCGTTCAGTACCGGGAAACCGACCTCGATTTCGTGAACCGA
CTCGCCGCCGAAGAGGGGATGTTCTACTTCCACGAGTTTGAAGCAGGCAAGCACCGCATTGTGTTTGCCGACGACGCGGC
GGCATTGACTCAAGGCCCCGAGCTCTTCTTCAACCTCGGTAACCGCTCGCTCGAACAAGGCCCCTATGTACGGCAGTTCC
ACTACCGGGAGGCGGTGCGCCCGTCGGATGTGGAGCTCAAAGACTACAGCTTCAAAACCCCGGCTTATGGCCTCTCCCAC
AAAAAGCAGGGCAGTGAGCTCGAACACCAGCGCGACACCTACCAGCACTTCGACTATCCGGGCCGCTACAAGCAGGATGG
CAGCGGCAAGGCCTTTGCCCAGCACCGGCTGGATGCGCTGCGCAATGACGCGGTGGCGGGCCAGGCTAAGTCCAACTGCG
CGGCTTTACAGCCGGGGCAGAGCTTCTCACTGACCGAACATCCCAACGGCAGTCTCAACACCGACTGGCAAATCGTGCGT
ATCCAGCACACCGGTGAGCAACCGCAGGCGCTGGAAGAGGAGGGTGGGAGCGGCCCGACCGTCTACCACAACGAATTTGG
GGTGGTGAAAGCGAGCTCCACCTGGCGGGCACGCATCGGCAGCCCGGAAGCCCCTCACAAGCCGATGGTGGATGGCCCGC
AAATCGCCATGGTGGTGGGGCCCGACGGGGAAGAAATTTACTGCGACGAGCACGGCAGGGTGAAGCTGCAGTTCCCGTGG
GACCGCTATGGTTCGAGCAACGACCAGAGCTCCTGCTGGGTGCGGGTCTCGCAAGGCTGGGCGGGCGGTCAGTACGGCAT
GATGGCCATCCCGCGCATCGGCCACGAGGTCATCGTGAGTTTCTTGGAAGGGGACCCGGACCAGCCCATCGTGACCGGTC
GCACCTATCATGCCACCAACCGGCCTCCTTATGAGCTGCCTGCCAACAAGACCCGCACCGTGCTGCGCACCGAAACCCAC
CAGGGTGAAGGCTTCAACGAGCTGCGCTTTGAAGACCAGGCTGGGCAGGAAGAGATTTACATCCACGGTCAGAAAGACCT
GAACGTGCTTATCGAGAACGATGCGGCGTGGCACATCAAACACGACCAGCACACCGATATCGACAATGAGCGGGTGACCC
GCATCAAGGCCAATGACCACCTGACGGTAGAGGGTGAGAAGCGCGACCAGATAAAGGCCGACTACTCGCTGACGGTGGAT
GCCAGCCTGCACCAGAAGCTGGGACAGTCCCTGCTGGTGGAAGCCGGGCAGGAAGTGCATATCAAGGTGGGCGACAAGTT
GGTGCTGGAGGCAGGTTCTGAGATCACCCTCAAGGGAGGCGGCAGCTTTGTGAAAGTTGACCCGAGCGGCATCAAGTTGG
TGGGCCCCGCCATCAAACTCAACGCCGGCGGCAGCGCAGGCTCAGGCTCTGGCTGGGCAGGTCAGCCTCCCATCATCCCC
AAAGGCGTGGAAGTGGTGAAAGCCCCTGAACTGGTTGAACTGGTGAAGGCGATTGCCACCGAGAAGGCGATGGAGGCGCT
GCTCAAGGAGCAAGGGCCTGCGCAGACCTTTTTCGTGCCATCCCGCTAG