Detailed information of component protein


Summary

Component ID T6CP015412
Component protein type TssM
T6SS ID (Type) T6SS01218 experimental (Type i4b)
Strain Xanthomonas oryzae pv. oryzicola strain GX01
Replicon chromosome
Sequence Protein sequence (1246 a.a.); Nucleotide sequence (3738 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) XOCgx_RS16645
Coordinate (Strand) 3546845..3550582 (-)
NCBI ID WP_024711217.1
RefSeq NZ_CP043403
Uniprot ID A0A5C2EW45_9XANT, A0A5E8KUV3_9XANT
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 7.2e-83 189..441
IcmF-related PF06761.14 2.1e-78 493..832
IcmF_C PF06744.14 4.6e-18 1088..1190
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-11 MFSNLRYYLRD
Transmembrane helix 12-31 YRLWMILGLLAAAAVAYFGT
Outside 32-35 EGLR
Transmembrane helix 36-58 EIGLWAAAVLAVCLTIWLLVWIV
Inside 59-437 RRIIARRAARSLDAMVQGEADRAVAAAQPANRADTEALRSRMLEAVKAIKSSRLGVLKGKAALYELPWYVIIGNPAAGKSTAILNSGLQFPFEDNRGNVIQGIGGTRNCDWYFTMTGIVLDTAGRYSVSVEDRLEWLTFLALLKKHRPRAPINGIIIAASIAELSGSKPEFAIELAKNLRQRVQEITQRLEVFAPVYVVFTKADLIAGFSEFFHNLDPSERENVWGATLPYDPTANTDALAAFDTHFDELAEGLKEMSLAHMAMQRGRQVSPGLLTLPLEFVGIKPALRTFIATLFEENPYQFKPVFRGFYFSSALQEGHSVHHASERVSRQFALQARAQSGEAVPSGQTAYFLKDLFRKVIFTDKQLVRQYSSPHQNR
Transmembrane helix 438-460 LRYGVFLGGVAVLALALGLWTWS
Outside 461-1245 YTTNVQLVNNATKDLDQAVRVQANRVDLQSRIDALLLLQDRLEQLDRYKQKGGITSGLGLYQGGNIRKKLLAEYYNGMRQVMLEPTTANLESFLGQVVSERDRLGKAAGPQQAAQQDSVLYQDASPTDTNDAYNALKTYLMLGNRKHVESAHLTQQLTLFWRGWLDANRGQMTREEMTRAAEKLMTFYVAQAEDAQWPQVQTKVTLVNDSREALTRVMKGQPAMQRVFAQIKARAAARFPTVTVNALIGEEANSGAITGSYAISGAFSREAWEEYVKDAIKEAANTQLSTTDWVLDTSEQSDLSLAGSPEHVARELVTAYKQEYAKEWRKFIQGISVAPFHGFDQALSRMNRIGDPANSPLRKLLEKINEQTIWDNPMADALSKKASGGVVAWFQRVILRRDPADAGKAEQQPVGPIGKTFEGLARLMTKRTDQPAVIDAYFDKLAKLRTRMNAIKNQGQIGVGARKLMQDTFSNEGSELSAALTLVDEQMLTGLDETQRDAMRPLLLRPLTQTFAALVPPTENEINRVWAAQVYEPFRNGIGQRYPFNLNTDVDAAPGDVAAIFGASGAIAAFNKDALGTLVIQRGNLLESRRWAGIGITLSSELVANYGNWVSGQSGAVAKDVSIFELLPTPAVGAIEYTIDISGQTLRYRNTPPQWMTMQWPNAGAVPGAKITAVTSDGRSVEMFNAPGDNGLGRLIKAAAQEPVDDATRRFTWSDQGVSISVQMRIVQSAGKATGGGDWQRGLQLPATVAGSPTTVGADAPAAAAPPGSVPAGASAQEGGQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9849 - -


  Protein sequence: 1246 a.a.    

>T6CP015412 NZ_CP043403:c3550582-3546845 [Xanthomonas oryzae pv. oryzicola] [TssM]
MFSNLRYYLRDYRLWMILGLLAAAAVAYFGTEGLREIGLWAAAVLAVCLTIWLLVWIVRRIIARRAARSLDAMVQGEADR
AVAAAQPANRADTEALRSRMLEAVKAIKSSRLGVLKGKAALYELPWYVIIGNPAAGKSTAILNSGLQFPFEDNRGNVIQG
IGGTRNCDWYFTMTGIVLDTAGRYSVSVEDRLEWLTFLALLKKHRPRAPINGIIIAASIAELSGSKPEFAIELAKNLRQR
VQEITQRLEVFAPVYVVFTKADLIAGFSEFFHNLDPSERENVWGATLPYDPTANTDALAAFDTHFDELAEGLKEMSLAHM
AMQRGRQVSPGLLTLPLEFVGIKPALRTFIATLFEENPYQFKPVFRGFYFSSALQEGHSVHHASERVSRQFALQARAQSG
EAVPSGQTAYFLKDLFRKVIFTDKQLVRQYSSPHQNRLRYGVFLGGVAVLALALGLWTWSYTTNVQLVNNATKDLDQAVR
VQANRVDLQSRIDALLLLQDRLEQLDRYKQKGGITSGLGLYQGGNIRKKLLAEYYNGMRQVMLEPTTANLESFLGQVVSE
RDRLGKAAGPQQAAQQDSVLYQDASPTDTNDAYNALKTYLMLGNRKHVESAHLTQQLTLFWRGWLDANRGQMTREEMTRA
AEKLMTFYVAQAEDAQWPQVQTKVTLVNDSREALTRVMKGQPAMQRVFAQIKARAAARFPTVTVNALIGEEANSGAITGS
YAISGAFSREAWEEYVKDAIKEAANTQLSTTDWVLDTSEQSDLSLAGSPEHVARELVTAYKQEYAKEWRKFIQGISVAPF
HGFDQALSRMNRIGDPANSPLRKLLEKINEQTIWDNPMADALSKKASGGVVAWFQRVILRRDPADAGKAEQQPVGPIGKT
FEGLARLMTKRTDQPAVIDAYFDKLAKLRTRMNAIKNQGQIGVGARKLMQDTFSNEGSELSAALTLVDEQMLTGLDETQR
DAMRPLLLRPLTQTFAALVPPTENEINRVWAAQVYEPFRNGIGQRYPFNLNTDVDAAPGDVAAIFGASGAIAAFNKDALG
TLVIQRGNLLESRRWAGIGITLSSELVANYGNWVSGQSGAVAKDVSIFELLPTPAVGAIEYTIDISGQTLRYRNTPPQWM
TMQWPNAGAVPGAKITAVTSDGRSVEMFNAPGDNGLGRLIKAAAQEPVDDATRRFTWSDQGVSISVQMRIVQSAGKATGG
GDWQRGLQLPATVAGSPTTVGADAPAAAAPPGSVPAGASAQEGGQ*

  Nucleotide sequence: 3738 bp    

>T6CP015412 NZ_CP043403:c3550582-3546845 [Xanthomonas oryzae pv. oryzicola] [TssM]
ATGTTCAGCAATCTCAGGTATTACCTTCGCGATTACCGTCTCTGGATGATTCTCGGCTTGCTCGCCGCCGCCGCAGTCGC
CTACTTCGGCACCGAGGGCTTGCGCGAAATTGGCCTGTGGGCGGCGGCGGTGCTGGCGGTCTGTCTGACGATATGGCTGC
TGGTGTGGATCGTGCGCCGGATCATTGCGCGCCGCGCTGCGCGCAGCCTGGATGCGATGGTGCAAGGCGAAGCCGATCGC
GCGGTCGCCGCCGCGCAGCCGGCCAACCGCGCCGACACCGAAGCGCTGCGCTCGCGCATGTTAGAGGCGGTCAAGGCGAT
CAAGTCCTCGCGCCTGGGCGTGCTCAAGGGCAAGGCGGCGCTGTACGAACTGCCGTGGTACGTGATCATTGGCAATCCTG
CGGCTGGCAAGAGCACCGCGATCCTCAATTCCGGGTTGCAGTTCCCGTTCGAGGACAATCGCGGCAACGTGATCCAGGGC
ATCGGCGGCACGCGCAATTGCGATTGGTACTTCACCATGACCGGTATCGTGCTCGATACCGCCGGTCGGTATTCGGTCAG
TGTCGAAGACCGCCTGGAATGGCTCACCTTTCTCGCGCTGCTGAAAAAGCACCGGCCGCGCGCGCCGATCAACGGCATCA
TCATCGCCGCCAGCATCGCCGAACTGTCCGGTAGCAAGCCCGAGTTCGCGATCGAGCTGGCCAAGAACCTGCGCCAGCGC
GTGCAGGAAATTACCCAGCGCCTGGAAGTGTTCGCGCCGGTGTACGTGGTGTTTACCAAGGCCGACCTGATCGCCGGCTT
CTCCGAATTCTTCCACAATCTGGATCCGTCCGAGCGCGAGAACGTGTGGGGTGCGACCCTGCCCTACGATCCGACCGCCA
ATACCGATGCGCTGGCCGCCTTCGACACTCATTTCGACGAACTGGCCGAAGGCCTCAAGGAAATGAGCCTGGCGCACATG
GCGATGCAGCGTGGGCGTCAGGTGTCGCCGGGCCTGCTGACACTGCCGCTGGAGTTCGTCGGCATCAAACCGGCGCTGCG
CACCTTCATCGCCACGCTGTTCGAAGAAAACCCCTATCAGTTCAAGCCGGTGTTCCGCGGTTTCTACTTCAGCAGCGCGT
TGCAGGAAGGCCATTCGGTGCACCACGCCTCCGAGCGGGTGAGCCGCCAGTTCGCGCTGCAGGCGCGTGCGCAATCCGGC
GAAGCGGTGCCGTCGGGACAGACCGCTTACTTCCTGAAAGACCTGTTCCGCAAGGTCATCTTCACCGACAAACAGCTCGT
CCGGCAGTACTCCAGCCCGCACCAGAACCGCCTGCGCTACGGTGTCTTCCTCGGTGGCGTCGCCGTGCTGGCGTTGGCGC
TGGGTCTGTGGACCTGGTCCTACACCACCAACGTGCAACTGGTGAACAACGCCACCAAGGATCTGGATCAGGCCGTGCGC
GTGCAGGCCAACCGGGTCGACTTGCAATCGCGCATCGACGCGCTGCTGCTGTTGCAGGATCGGCTCGAGCAGCTGGACCG
CTACAAGCAAAAGGGCGGCATCACCTCCGGGCTGGGCCTGTACCAGGGCGGCAACATCCGCAAGAAGCTGCTGGCCGAGT
ACTACAACGGCATGCGCCAGGTGATGCTTGAGCCGACCACCGCCAATCTGGAGTCGTTCCTGGGGCAAGTGGTCAGCGAG
CGCGACAGGCTCGGCAAGGCGGCCGGCCCGCAGCAGGCCGCGCAGCAAGACAGCGTGCTGTATCAGGACGCGTCGCCGAC
CGATACCAACGACGCCTACAACGCGCTGAAGACCTACCTGATGCTGGGCAACCGCAAGCACGTGGAGAGCGCGCACCTGA
CGCAGCAGCTGACCCTGTTCTGGCGCGGCTGGCTGGACGCCAATCGCGGCCAGATGACCCGCGAGGAGATGACCCGCGCG
GCCGAGAAGCTGATGACGTTCTACGTCGCCCAGGCCGAAGATGCGCAGTGGCCGCAGGTGCAGACCAAGGTCACCCTGGT
CAACGACAGCCGCGAGGCGCTGACCCGGGTGATGAAGGGCCAGCCGGCGATGCAACGCGTATTCGCGCAGATCAAGGCGC
GCGCGGCGGCGCGCTTCCCCACGGTGACGGTCAACGCGCTGATCGGCGAGGAAGCCAACAGCGGCGCGATCACCGGCAGC
TATGCCATTTCCGGGGCGTTCTCGCGCGAGGCGTGGGAAGAATACGTCAAGGACGCGATCAAGGAAGCGGCCAATACGCA
GCTCAGCACCACCGACTGGGTCCTGGACACGAGCGAGCAGAGCGACCTGTCGCTGGCCGGCAGCCCTGAGCACGTCGCGC
GCGAACTGGTGACGGCGTACAAGCAGGAATACGCCAAGGAGTGGCGCAAGTTCATCCAGGGGATCAGCGTGGCGCCGTTC
CATGGCTTCGACCAGGCGCTGTCGCGGATGAATCGCATCGGCGATCCGGCCAACTCGCCGTTGCGCAAGCTGCTGGAAAA
GATCAACGAGCAGACCATCTGGGACAACCCGATGGCCGACGCCTTATCGAAGAAGGCGTCCGGCGGGGTCGTCGCCTGGT
TCCAGCGGGTGATCCTGCGCCGCGATCCGGCCGACGCCGGCAAAGCTGAGCAGCAGCCGGTCGGCCCGATCGGCAAGACC
TTCGAGGGCCTGGCGCGGCTGATGACCAAGCGCACGGACCAGCCGGCGGTCATTGATGCCTACTTCGACAAGTTGGCCAA
GTTGCGCACGCGCATGAACGCGATCAAGAACCAGGGCCAGATCGGCGTCGGCGCGCGCAAGCTGATGCAGGACACCTTCA
GCAACGAAGGCTCCGAACTCAGCGCCGCGCTGACCCTGGTGGACGAGCAGATGCTGACCGGGCTGGATGAAACCCAGCGC
GACGCGATGCGTCCGCTGTTGCTGCGTCCGTTGACCCAGACCTTCGCCGCGCTGGTGCCGCCGACTGAGAACGAGATCAA
CCGGGTGTGGGCGGCGCAGGTCTACGAACCGTTCCGCAACGGCATCGGCCAGCGCTATCCGTTCAACCTCAACACGGACG
TGGATGCCGCCCCCGGCGACGTGGCTGCGATCTTCGGCGCCAGCGGCGCGATCGCCGCGTTCAACAAGGACGCACTCGGC
ACCTTGGTGATCCAGCGCGGCAACCTGCTCGAATCGCGGCGTTGGGCGGGCATCGGCATCACCTTGTCCAGCGAACTGGT
GGCCAACTACGGGAACTGGGTCAGCGGCCAGTCCGGCGCGGTGGCCAAGGACGTCAGCATCTTCGAGCTCCTGCCGACGC
CGGCGGTAGGCGCGATCGAATACACCATCGACATCTCTGGCCAGACGCTGCGCTACCGCAACACCCCGCCGCAGTGGATG
ACCATGCAGTGGCCGAACGCCGGTGCGGTGCCCGGTGCCAAGATCACCGCGGTCACCAGCGACGGGCGCAGCGTCGAGAT
GTTCAATGCGCCTGGCGACAATGGCCTTGGCCGCTTGATCAAGGCAGCCGCCCAGGAACCCGTGGACGATGCCACCCGTC
GCTTCACCTGGAGCGACCAAGGCGTGTCCATCAGCGTGCAGATGCGCATCGTGCAGAGTGCCGGCAAGGCTACCGGGGGG
GGCGACTGGCAGCGTGGCCTGCAACTTCCGGCGACGGTGGCCGGTAGCCCGACAACCGTCGGTGCCGATGCGCCAGCGGC
CGCTGCGCCGCCCGGTTCGGTTCCGGCGGGTGCGTCCGCACAAGAAGGTGGCCAATGA