Detailed information of component protein


Summary

Component ID T6CP015411
Component protein type TssA
T6SS ID (Type) T6SS01218 experimental (Type i4b)
Strain Xanthomonas oryzae pv. oryzicola strain GX01
Replicon chromosome
Sequence Protein sequence (358 a.a.); Nucleotide sequence (1074 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) XOCgx_RS16630
Coordinate (Strand) 3543948..3545021 (+)
NCBI ID WP_041183119.1
RefSeq NZ_CP043403
Uniprot ID A0A5C2EWH6_9XANT, A0A5E8KUV8_9XANT
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 3.4e-37 8..130

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-357 MLDLDALLAPISDHQPAGEDLSFSIEFDRIQEARRSDDPTLDQGEWQTDIKYADWSSVARQCGDLLQTRTKDLRLAGWMTEATTQIDGFAGLALGYRLIAGLCDRYWDEVHPLVVDGDHEERIGNLSWLLTNSLHWLRAVPIASGPQGRFGLNAFEAAHTRSANAGSGDDEGQPSLDLLEAVRRDTPHDFYRQLVDALLNCAEALQSLQAAVDDRLGIDGPSFSAVREQVEHLQRTVARFARDAGLLLDGEAEAGQHDMPGIAFGPAANKDAPSAPPPAPREPGGAPTTRKEALAQLRQVAEFFRRTEPHSPVAYLAEKAARWGEMPLHVWLKRVIKDGSVLNQMEEMLDVNQNLEQ



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9912 - -



  Protein sequence: 358 a.a.    

>T6CP015411 NZ_CP043403:3543948-3545021 [Xanthomonas oryzae pv. oryzicola] [TssA]
MLDLDALLAPISDHQPAGEDLSFSIEFDRIQEARRSDDPTLDQGEWQTDIKYADWSSVARQCGDLLQTRTKDLRLAGWMT
EATTQIDGFAGLALGYRLIAGLCDRYWDEVHPLVVDGDHEERIGNLSWLLTNSLHWLRAVPIASGPQGRFGLNAFEAAHT
RSANAGSGDDEGQPSLDLLEAVRRDTPHDFYRQLVDALLNCAEALQSLQAAVDDRLGIDGPSFSAVREQVEHLQRTVARF
ARDAGLLLDGEAEAGQHDMPGIAFGPAANKDAPSAPPPAPREPGGAPTTRKEALAQLRQVAEFFRRTEPHSPVAYLAEKA
ARWGEMPLHVWLKRVIKDGSVLNQMEEMLDVNQNLEQ*

  Nucleotide sequence: 1074 bp    

>T6CP015411 NZ_CP043403:3543948-3545021 [Xanthomonas oryzae pv. oryzicola] [TssA]
ATGCTGGATCTGGATGCCCTGCTGGCACCGATTTCCGACCATCAGCCGGCCGGCGAAGACCTGTCTTTCTCCATCGAGTT
CGATCGCATCCAGGAAGCCAGACGCTCGGACGATCCGACCCTGGACCAGGGCGAGTGGCAGACCGATATCAAGTATGCGG
ACTGGTCCAGCGTCGCCCGCCAGTGCGGCGATCTGCTGCAGACGCGTACCAAGGACCTACGCCTGGCCGGCTGGATGACC
GAGGCGACCACCCAGATCGACGGCTTCGCCGGGCTGGCGCTGGGTTACCGGCTGATCGCCGGGCTATGCGACCGGTACTG
GGACGAGGTGCACCCGCTGGTCGTCGATGGCGACCACGAAGAGCGCATCGGCAACCTGAGCTGGCTGCTGACCAATTCGC
TGCATTGGTTGCGCGCGGTGCCGATCGCCTCGGGACCGCAGGGCCGTTTCGGTCTCAACGCTTTCGAGGCCGCGCATACC
CGCAGCGCCAATGCCGGATCCGGCGACGACGAAGGCCAGCCCAGCCTGGACCTGCTCGAGGCCGTACGGCGCGATACGCC
TCACGATTTCTACCGGCAGTTGGTCGATGCGCTACTCAATTGCGCCGAAGCGCTGCAGTCGCTGCAGGCGGCGGTGGACG
ATCGCCTAGGCATCGACGGACCCAGCTTCAGCGCGGTGCGCGAGCAGGTGGAGCACCTGCAGCGCACCGTGGCGCGGTTC
GCCCGCGATGCCGGGCTACTGCTGGATGGCGAGGCCGAAGCCGGCCAGCACGACATGCCGGGCATCGCGTTCGGACCGGC
CGCGAACAAGGACGCGCCGTCGGCACCGCCGCCGGCGCCACGCGAGCCGGGCGGCGCACCGACCACCCGCAAGGAGGCGT
TGGCGCAACTGCGTCAGGTCGCCGAATTCTTCCGGCGTACCGAACCGCACAGCCCCGTCGCCTACTTGGCCGAAAAAGCC
GCGCGCTGGGGCGAGATGCCACTGCACGTGTGGTTGAAGCGGGTGATCAAAGACGGCAGCGTCCTCAACCAGATGGAAGA
GATGCTGGACGTCAACCAGAACCTGGAGCAGTAG