SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP015411
Component protein type	TssA
T6SS ID (Type)	T6SS01218 (Type i4b)
Strain	Xanthomonas oryzae pv. oryzicola strain GX01
Replicon	chromosome
Sequence	Protein sequence (358 a.a.); Nucleotide sequence (1074 bp)
Reference	[1] Zhu PC, Li YM, Yang X, et al. Type VI secretion system is not required for virulence on rice but for inter-bacterial competition in Xanthomonas oryzae pv. oryzicola. Res Microbiol. 2020 Mar;171(2):64-73. doi: 10.1016/j.resmic.2019.10.004. Epub 2019 Oct 30. PMID: 31676435

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	XOCgx_RS16630
Coordinate (Strand)	3543948..3545021 (+)
NCBI ID	WP_041183119.1
RefSeq	NZ_CP043403
Uniprot ID	A0A5C2EWH6_9XANT, A0A5E8KUV8_9XANT
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
ImpA_N	PF06812.14	3.4e-37	8..130

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-357	MLDLDALLAPISDHQPAGEDLSFSIEFDRIQEARRSDDPTLDQGEWQTDIKYADWSSVARQCGDLLQTRTKDLRLAGWMTEATTQIDGFAGLALGYRLIAGLCDRYWDEVHPLVVDGDHEERIGNLSWLLTNSLHWLRAVPIASGPQGRFGLNAFEAAHTRSANAGSGDDEGQPSLDLLEAVRRDTPHDFYRQLVDALLNCAEALQSLQAAVDDRLGIDGPSFSAVREQVEHLQRTVARFARDAGLLLDGEAEAGQHDMPGIAFGPAANKDAPSAPPPAPREPGGAPTTRKEALAQLRQVAEFFRRTEPHSPVAYLAEKAARWGEMPLHVWLKRVIKDGSVLNQMEEMLDVNQNLEQ

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9912	-	-

Protein sequence: 358 a.a.

						>T6CP015411 NZ_CP043403:3543948-3545021 [Xanthomonas oryzae pv. oryzicola] [TssA]
MLDLDALLAPISDHQPAGEDLSFSIEFDRIQEARRSDDPTLDQGEWQTDIKYADWSSVARQCGDLLQTRTKDLRLAGWMT
EATTQIDGFAGLALGYRLIAGLCDRYWDEVHPLVVDGDHEERIGNLSWLLTNSLHWLRAVPIASGPQGRFGLNAFEAAHT
RSANAGSGDDEGQPSLDLLEAVRRDTPHDFYRQLVDALLNCAEALQSLQAAVDDRLGIDGPSFSAVREQVEHLQRTVARF
ARDAGLLLDGEAEAGQHDMPGIAFGPAANKDAPSAPPPAPREPGGAPTTRKEALAQLRQVAEFFRRTEPHSPVAYLAEKA
ARWGEMPLHVWLKRVIKDGSVLNQMEEMLDVNQNLEQ*					

Nucleotide sequence: 1074 bp

						>T6CP015411 NZ_CP043403:3543948-3545021 [Xanthomonas oryzae pv. oryzicola] [TssA]
ATGCTGGATCTGGATGCCCTGCTGGCACCGATTTCCGACCATCAGCCGGCCGGCGAAGACCTGTCTTTCTCCATCGAGTT
CGATCGCATCCAGGAAGCCAGACGCTCGGACGATCCGACCCTGGACCAGGGCGAGTGGCAGACCGATATCAAGTATGCGG
ACTGGTCCAGCGTCGCCCGCCAGTGCGGCGATCTGCTGCAGACGCGTACCAAGGACCTACGCCTGGCCGGCTGGATGACC
GAGGCGACCACCCAGATCGACGGCTTCGCCGGGCTGGCGCTGGGTTACCGGCTGATCGCCGGGCTATGCGACCGGTACTG
GGACGAGGTGCACCCGCTGGTCGTCGATGGCGACCACGAAGAGCGCATCGGCAACCTGAGCTGGCTGCTGACCAATTCGC
TGCATTGGTTGCGCGCGGTGCCGATCGCCTCGGGACCGCAGGGCCGTTTCGGTCTCAACGCTTTCGAGGCCGCGCATACC
CGCAGCGCCAATGCCGGATCCGGCGACGACGAAGGCCAGCCCAGCCTGGACCTGCTCGAGGCCGTACGGCGCGATACGCC
TCACGATTTCTACCGGCAGTTGGTCGATGCGCTACTCAATTGCGCCGAAGCGCTGCAGTCGCTGCAGGCGGCGGTGGACG
ATCGCCTAGGCATCGACGGACCCAGCTTCAGCGCGGTGCGCGAGCAGGTGGAGCACCTGCAGCGCACCGTGGCGCGGTTC
GCCCGCGATGCCGGGCTACTGCTGGATGGCGAGGCCGAAGCCGGCCAGCACGACATGCCGGGCATCGCGTTCGGACCGGC
CGCGAACAAGGACGCGCCGTCGGCACCGCCGCCGGCGCCACGCGAGCCGGGCGGCGCACCGACCACCCGCAAGGAGGCGT
TGGCGCAACTGCGTCAGGTCGCCGAATTCTTCCGGCGTACCGAACCGCACAGCCCCGTCGCCTACTTGGCCGAAAAAGCC
GCGCGCTGGGGCGAGATGCCACTGCACGTGTGGTTGAAGCGGGTGATCAAAGACGGCAGCGTCCTCAACCAGATGGAAGA
GATGCTGGACGTCAACCAGAACCTGGAGCAGTAG					