Detailed information of component protein
Summary
| Component ID | T6CP015409 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS01218  (Type i4b) |
| Strain | Xanthomonas oryzae pv. oryzicola strain GX01 |
| Replicon | chromosome |
| Sequence | Protein sequence (264 a.a.); Nucleotide sequence (792 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | XOCgx_RS16505 |
| Coordinate (Strand) | 3515729..3516520 (+) |
| NCBI ID | WP_014502417.1 |
| RefSeq | NZ_CP043403 |
| Uniprot ID | UPI00022F9DB2 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DotU | PF09850.11 | 5.9e-55 | 33..232 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-211 | MMNPLPPTPGPMPSLTAQAPHGLASAHPSTPQSLLDLMADGFYLLLLLKRAQIPSDTESFVQSVQTFLDGVERGAVKLGIASEDIYAAKYAFCAAVDEAILSQPSALHETWERNPLQLRLFGEHLAGEHFFDRLEELRRQGAVRLPSLEIYHYCLLLGFEGKYRLEGPEKLGYLTARLGDEIIYFKGKRSGFAPHWPPPDNVRHALRRVVP |
| Transmembrane helix | 212-234 | LWLPAALVTGFGLLGFFGLRLSL |
| Inside | 235-263 | DHQTEQRMAAYNQVVQMPQRTAHITITLP |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.8686 | - | - |
Protein sequence: 264 a.a.
>T6CP015409 NZ_CP043403:3515729-3516520 [Xanthomonas oryzae pv. oryzicola] [TssL]
MMNPLPPTPGPMPSLTAQAPHGLASAHPSTPQSLLDLMADGFYLLLLLKRAQIPSDTESFVQSVQTFLDGVERGAVKLGI
ASEDIYAAKYAFCAAVDEAILSQPSALHETWERNPLQLRLFGEHLAGEHFFDRLEELRRQGAVRLPSLEIYHYCLLLGFE
GKYRLEGPEKLGYLTARLGDEIIYFKGKRSGFAPHWPPPDNVRHALRRVVPLWLPAALVTGFGLLGFFGLRLSLDHQTEQ
RMAAYNQVVQMPQRTAHITITLP*
MMNPLPPTPGPMPSLTAQAPHGLASAHPSTPQSLLDLMADGFYLLLLLKRAQIPSDTESFVQSVQTFLDGVERGAVKLGI
ASEDIYAAKYAFCAAVDEAILSQPSALHETWERNPLQLRLFGEHLAGEHFFDRLEELRRQGAVRLPSLEIYHYCLLLGFE
GKYRLEGPEKLGYLTARLGDEIIYFKGKRSGFAPHWPPPDNVRHALRRVVPLWLPAALVTGFGLLGFFGLRLSLDHQTEQ
RMAAYNQVVQMPQRTAHITITLP*
Nucleotide sequence: 792 bp
>T6CP015409 NZ_CP043403:3515729-3516520 [Xanthomonas oryzae pv. oryzicola] [TssL]
ATGATGAACCCGCTGCCCCCCACCCCCGGCCCGATGCCGTCGCTGACCGCGCAGGCGCCGCACGGCCTGGCCAGCGCACA
TCCCTCCACGCCGCAGAGCCTGCTCGACCTGATGGCAGACGGCTTCTACCTGTTGCTGCTGCTCAAGCGCGCGCAGATAC
CCAGCGACACCGAATCCTTCGTGCAGTCGGTGCAGACATTCCTCGATGGCGTGGAACGCGGCGCAGTCAAGCTCGGCATC
GCCTCCGAGGACATCTACGCGGCCAAATACGCGTTCTGCGCGGCAGTGGACGAAGCGATCCTGTCGCAGCCCTCGGCACT
GCACGAAACCTGGGAACGCAATCCGCTGCAGCTGCGCCTGTTCGGCGAACACCTGGCCGGCGAGCATTTCTTCGATCGCC
TGGAAGAGCTGCGCCGCCAGGGCGCCGTGCGCCTGCCCTCGCTGGAGATCTACCACTATTGCCTGCTGCTTGGCTTCGAA
GGCAAGTATCGGCTGGAAGGGCCGGAGAAGCTCGGCTACCTGACCGCGCGGCTGGGCGACGAGATCATCTATTTCAAGGG
CAAGCGCAGCGGTTTCGCACCGCATTGGCCGCCGCCGGACAACGTGCGCCATGCCTTGCGCCGTGTGGTACCGCTGTGGC
TGCCGGCCGCGCTGGTGACCGGCTTCGGCCTGCTCGGCTTCTTCGGTCTGCGCCTGTCTCTGGACCACCAGACCGAGCAG
CGCATGGCCGCCTACAACCAGGTGGTGCAGATGCCGCAACGCACCGCGCACATTACGATCACTCTGCCGTGA
ATGATGAACCCGCTGCCCCCCACCCCCGGCCCGATGCCGTCGCTGACCGCGCAGGCGCCGCACGGCCTGGCCAGCGCACA
TCCCTCCACGCCGCAGAGCCTGCTCGACCTGATGGCAGACGGCTTCTACCTGTTGCTGCTGCTCAAGCGCGCGCAGATAC
CCAGCGACACCGAATCCTTCGTGCAGTCGGTGCAGACATTCCTCGATGGCGTGGAACGCGGCGCAGTCAAGCTCGGCATC
GCCTCCGAGGACATCTACGCGGCCAAATACGCGTTCTGCGCGGCAGTGGACGAAGCGATCCTGTCGCAGCCCTCGGCACT
GCACGAAACCTGGGAACGCAATCCGCTGCAGCTGCGCCTGTTCGGCGAACACCTGGCCGGCGAGCATTTCTTCGATCGCC
TGGAAGAGCTGCGCCGCCAGGGCGCCGTGCGCCTGCCCTCGCTGGAGATCTACCACTATTGCCTGCTGCTTGGCTTCGAA
GGCAAGTATCGGCTGGAAGGGCCGGAGAAGCTCGGCTACCTGACCGCGCGGCTGGGCGACGAGATCATCTATTTCAAGGG
CAAGCGCAGCGGTTTCGCACCGCATTGGCCGCCGCCGGACAACGTGCGCCATGCCTTGCGCCGTGTGGTACCGCTGTGGC
TGCCGGCCGCGCTGGTGACCGGCTTCGGCCTGCTCGGCTTCTTCGGTCTGCGCCTGTCTCTGGACCACCAGACCGAGCAG
CGCATGGCCGCCTACAACCAGGTGGTGCAGATGCCGCAACGCACCGCGCACATTACGATCACTCTGCCGTGA