Detailed information of component protein


Summary

Component ID T6CP015409
Component protein type TssL
T6SS ID (Type) T6SS01218 experimental (Type i4b)
Strain Xanthomonas oryzae pv. oryzicola strain GX01
Replicon chromosome
Sequence Protein sequence (264 a.a.); Nucleotide sequence (792 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) XOCgx_RS16505
Coordinate (Strand) 3515729..3516520 (+)
NCBI ID WP_014502417.1
RefSeq NZ_CP043403
Uniprot ID UPI00022F9DB2
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 5.9e-55 33..232

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-211 MMNPLPPTPGPMPSLTAQAPHGLASAHPSTPQSLLDLMADGFYLLLLLKRAQIPSDTESFVQSVQTFLDGVERGAVKLGIASEDIYAAKYAFCAAVDEAILSQPSALHETWERNPLQLRLFGEHLAGEHFFDRLEELRRQGAVRLPSLEIYHYCLLLGFEGKYRLEGPEKLGYLTARLGDEIIYFKGKRSGFAPHWPPPDNVRHALRRVVP
Transmembrane helix 212-234 LWLPAALVTGFGLLGFFGLRLSL
Inside 235-263 DHQTEQRMAAYNQVVQMPQRTAHITITLP



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8686 - -



  Protein sequence: 264 a.a.    

>T6CP015409 NZ_CP043403:3515729-3516520 [Xanthomonas oryzae pv. oryzicola] [TssL]
MMNPLPPTPGPMPSLTAQAPHGLASAHPSTPQSLLDLMADGFYLLLLLKRAQIPSDTESFVQSVQTFLDGVERGAVKLGI
ASEDIYAAKYAFCAAVDEAILSQPSALHETWERNPLQLRLFGEHLAGEHFFDRLEELRRQGAVRLPSLEIYHYCLLLGFE
GKYRLEGPEKLGYLTARLGDEIIYFKGKRSGFAPHWPPPDNVRHALRRVVPLWLPAALVTGFGLLGFFGLRLSLDHQTEQ
RMAAYNQVVQMPQRTAHITITLP*

  Nucleotide sequence: 792 bp    

>T6CP015409 NZ_CP043403:3515729-3516520 [Xanthomonas oryzae pv. oryzicola] [TssL]
ATGATGAACCCGCTGCCCCCCACCCCCGGCCCGATGCCGTCGCTGACCGCGCAGGCGCCGCACGGCCTGGCCAGCGCACA
TCCCTCCACGCCGCAGAGCCTGCTCGACCTGATGGCAGACGGCTTCTACCTGTTGCTGCTGCTCAAGCGCGCGCAGATAC
CCAGCGACACCGAATCCTTCGTGCAGTCGGTGCAGACATTCCTCGATGGCGTGGAACGCGGCGCAGTCAAGCTCGGCATC
GCCTCCGAGGACATCTACGCGGCCAAATACGCGTTCTGCGCGGCAGTGGACGAAGCGATCCTGTCGCAGCCCTCGGCACT
GCACGAAACCTGGGAACGCAATCCGCTGCAGCTGCGCCTGTTCGGCGAACACCTGGCCGGCGAGCATTTCTTCGATCGCC
TGGAAGAGCTGCGCCGCCAGGGCGCCGTGCGCCTGCCCTCGCTGGAGATCTACCACTATTGCCTGCTGCTTGGCTTCGAA
GGCAAGTATCGGCTGGAAGGGCCGGAGAAGCTCGGCTACCTGACCGCGCGGCTGGGCGACGAGATCATCTATTTCAAGGG
CAAGCGCAGCGGTTTCGCACCGCATTGGCCGCCGCCGGACAACGTGCGCCATGCCTTGCGCCGTGTGGTACCGCTGTGGC
TGCCGGCCGCGCTGGTGACCGGCTTCGGCCTGCTCGGCTTCTTCGGTCTGCGCCTGTCTCTGGACCACCAGACCGAGCAG
CGCATGGCCGCCTACAACCAGGTGGTGCAGATGCCGCAACGCACCGCGCACATTACGATCACTCTGCCGTGA