Detailed information of component protein
Summary
| Component ID | T6CP015407 |
| Component protein type | TssJ |
| T6SS ID (Type) | T6SS01218  (Type i4b) |
| Strain | Xanthomonas oryzae pv. oryzicola strain GX01 |
| Replicon | chromosome |
| Sequence | Protein sequence (203 a.a.); Nucleotide sequence (609 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | XOCgx_RS16495 |
| Coordinate (Strand) | 3513638..3514246 (+) |
| NCBI ID | WP_044750743.1 |
| RefSeq | NZ_CP043403 |
| Uniprot ID | A0A0C5VDX9_9XANT, A0A5E8KUP9_9XANT |
| KEGG ID | xoz:BE73_16555 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS-SciN | PF12790.9 | 9e-26 | 53..171 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-6 | MNTSAH |
| Transmembrane helix | 7-29 | RFNFLLVLVVAALALSGCASGGI |
| Outside | 30-202 | GKAMDKTLQAVGIKEAKPEASPMIPLRLLAGSNLNAGNDTHATAAVVKIYHLRSAQRFEQATFNAFLDQAGEQAALGADLLSVNEIVLTPSARQELNEQMSEGTTTLGVVALFRAPAEGRWRMAFDTRRKELPTQGITIGIHACALTTASPALVTRLAGDPSSLASVRCAAAR |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| LIPO(Sec/SPII) | 0.9966 | pos: 23-24. LSG-CA. | MNTSAHRFNFLLVLVVAALALSG |
Protein sequence: 203 a.a.
>T6CP015407 NZ_CP043403:3513638-3514246 [Xanthomonas oryzae pv. oryzicola] [TssJ]
MNTSAHRFNFLLVLVVAALALSGCASGGIGKAMDKTLQAVGIKEAKPEASPMIPLRLLAGSNLNAGNDTHATAAVVKIYH
LRSAQRFEQATFNAFLDQAGEQAALGADLLSVNEIVLTPSARQELNEQMSEGTTTLGVVALFRAPAEGRWRMAFDTRRKE
LPTQGITIGIHACALTTASPALVTRLAGDPSSLASVRCAAAR*
MNTSAHRFNFLLVLVVAALALSGCASGGIGKAMDKTLQAVGIKEAKPEASPMIPLRLLAGSNLNAGNDTHATAAVVKIYH
LRSAQRFEQATFNAFLDQAGEQAALGADLLSVNEIVLTPSARQELNEQMSEGTTTLGVVALFRAPAEGRWRMAFDTRRKE
LPTQGITIGIHACALTTASPALVTRLAGDPSSLASVRCAAAR*
Nucleotide sequence: 609 bp
>T6CP015407 NZ_CP043403:3513638-3514246 [Xanthomonas oryzae pv. oryzicola] [TssJ]
ATGAACACATCCGCCCACCGTTTCAATTTTCTGTTGGTCCTTGTTGTGGCCGCGCTAGCCCTGTCCGGCTGCGCCAGCGG
CGGCATCGGCAAGGCGATGGACAAGACCCTGCAGGCAGTGGGCATCAAGGAAGCAAAGCCAGAGGCGTCTCCGATGATTC
CCCTGCGGCTGCTTGCCGGCAGCAACCTGAATGCGGGCAACGACACGCACGCCACCGCAGCGGTGGTCAAGATCTATCAC
CTGCGCAGCGCGCAACGCTTCGAGCAGGCCACGTTCAACGCGTTCCTCGATCAGGCCGGAGAGCAGGCGGCGCTGGGCGC
GGACCTGCTGTCGGTCAACGAGATCGTTCTGACGCCAAGCGCCCGCCAGGAACTGAACGAGCAGATGTCCGAAGGCACCA
CCACCCTGGGCGTGGTGGCCTTGTTCCGCGCGCCGGCCGAGGGCCGCTGGCGCATGGCCTTCGATACGCGACGCAAGGAA
TTGCCGACCCAGGGCATCACCATCGGCATTCACGCCTGCGCGCTGACCACCGCAAGCCCGGCGCTGGTCACCCGCCTGGC
GGGCGATCCCAGCAGCCTGGCGTCGGTGCGTTGCGCCGCTGCGCGCTAG
ATGAACACATCCGCCCACCGTTTCAATTTTCTGTTGGTCCTTGTTGTGGCCGCGCTAGCCCTGTCCGGCTGCGCCAGCGG
CGGCATCGGCAAGGCGATGGACAAGACCCTGCAGGCAGTGGGCATCAAGGAAGCAAAGCCAGAGGCGTCTCCGATGATTC
CCCTGCGGCTGCTTGCCGGCAGCAACCTGAATGCGGGCAACGACACGCACGCCACCGCAGCGGTGGTCAAGATCTATCAC
CTGCGCAGCGCGCAACGCTTCGAGCAGGCCACGTTCAACGCGTTCCTCGATCAGGCCGGAGAGCAGGCGGCGCTGGGCGC
GGACCTGCTGTCGGTCAACGAGATCGTTCTGACGCCAAGCGCCCGCCAGGAACTGAACGAGCAGATGTCCGAAGGCACCA
CCACCCTGGGCGTGGTGGCCTTGTTCCGCGCGCCGGCCGAGGGCCGCTGGCGCATGGCCTTCGATACGCGACGCAAGGAA
TTGCCGACCCAGGGCATCACCATCGGCATTCACGCCTGCGCGCTGACCACCGCAAGCCCGGCGCTGGTCACCCGCCTGGC
GGGCGATCCCAGCAGCCTGGCGTCGGTGCGTTGCGCCGCTGCGCGCTAG